Gene detail

Detail information of GWHGAAEX011960/evm.TU.scaffold_4.287

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|14520575\|ref\|NP_126050.1\|	3.00E-84	chromosome segregation protein smc1 [Pyrococcus abyssi GE5]
KOG	KOG0018	0	Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1)
nr	gi\|743835761\|ref\|XP_010935908.1\|	0	PREDICTED: structural maintenance of chromosomes protein 1 [Elaeis guineensis]
Swissprot	tr\|Q6Q1P4\|SMC1_ARATH	0	Structural maintenance of chromosomes protein 1
trEMBL	tr\|M0T0G6\|M0T0G6_MUSAM	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}
TAIR	AT3G54670	0	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	6076135	6141011	-

Transcript Sequence
>GWHTAAEX011960 GTCGGGGCAAAACAATACATTCAAATGAATTTACCGACATAATAGTGAAAGGGAACCAATGCCGATGGATTAGTGCGCGAGCAGGCGCTAAAGCATATTGCTTACTTGCGTACTCCTAAACCGCCAGTGATCATCTTGTTTCGCTTTTCGAATTTCGATATTCCGCCCAATCTCCATCTTCTTCAGCTTTCCGAAGTCTTCATCTGTCTATTTTCGGTGTTTAGTGATCAAGGTTCAAGTTCCAGTCCTTGTTTCTCTTCTAAACCCTAGAATTTCATTGCTGTCATATCGATCTCTCTGGTCTGGACAGCACGATGCCGTCGCTGGTTACTCAAGGGAAAATTCTCCGCCTGGAGCTTGAGAATTTCAAATCGTACAAGGGGCGGCAGATGATCGGTCCGTTCTTTGACTTTACGGCTATTATCGGTCCGAATGGGTCCGGCAAGTCTAACCTCATGGATGCAATCAGTTTCGTCCTAGGCGTACGGTCCACCCATCTCCGTGGTGCTCAGCTAAGGGATCTGATCTATGCTTCCGATGACCGAGAGAAGGAGCAAAAGGGGAGGAGGGCCTTTGTCCGGCTTGTGTACCAGATGGGCAATGGCTCGGAGCTTATGTTCACCAGGACCATCACTGGTACGGGCAGCAGCGAGTATAGGATCGATCAGAAAGTTGTGACTTGGGATGAGTACAACTCCAAGTTGAGGTCTCTGGGTATTCTTGTGAAGGCCAGGAATTTTCTAGTCTTTCAGGGTGATGTAGAATCCATTGCATCAAAAAACCCAAGAGAACTTACTGCCCTTCTTGAGCAAATATCTGGGTCTGATGAGCTCAAAAAAGACTACGAGGAACTAGAGGAGCTAAAGGCAATGGCAGAAGAAAAATCAGCTCTTGTTTACCAAGAAAAGAGAACGGTGGTTATGGAAAGAAAACAAAAGAAAGCACAGAAAGAAGAGGCTGAGAAACATTTGCGCTTGCAAGATCAATTAAAGTTATTAAAACAAGATCTCTTCTTATGGCAACTTTATAACATTGAGAAGGATACTGAAAAACTGAATTTAGAAGTTGGAAATGCCAAGGAAGAACTAGATGGCCATAACAAGAAACTGAAGGAACACGATCAACTTTTGGATGCAAAAAAGAAAGAGCAGAATGCATCTTTGAAGGAGATCTCATTATGTGAAAAAAATATATCAAAGAAAAAAACTGAACTAGATCAGAAGCAACCAGAGCTTCTTAAATTAAAAGAAGCAACGTCACGAATCAATTCAAAAATTAAAAGCAGTAAGAAGGAGCTTGAAAAAAAGAGAGAAGAAAAGCGGAAACATGAGAAAGAAATATTGAAACTAGAAAATGACTTGTCTGATGTGAAGAAAGCCCTTGATGAATTGAATGAACGTGGTCAAGATGGAGTTGCCAAGCTGCAGTTAGCTGATAGTCAAGTCGAAGAATATCACAGAATCAAAGAGGCTGCTGGGACGAAAACTGCCAAATTGAAGGATGAGAAGGAAGTTCTTGACCGGCAACTACGTGCTGCTGAGGAAGCTTGCAAGAATTTGCATGAAAATCTCCAAGAGCTCCAAAGCCGTGAACAGGAGCTTTCATTGCAGGAAGAACAGTTGAAAGCAAAATTAAAAATTATTAATGAAGCAATTGCAAAGCACGAAGGAGAAATTTCACGTGCTAATAAAGAACTGAAAGGAATACAGACTGATAGTAGCTCAGCCAGGGGAAGATACCAAAGTCTAAAGCAGAAAGTTGAAGAATGTGATAAAAAATTGCGGGAGCTTAAGGCTGATAAGCATGAAAGTGAGCGGGATGCTCGATTGTCCGAGACTGTACAGAGCCTTAAACGGTTATTTTCTGGAGTGCATGGTAGGATGACGGAATTGTGTAGGCCATCACAGAAAAAGTTTAATCTTGCTGTTACAGTTGCTATGGGAAAGTTTATGGACGCCATAGTAGTAGAAGATGAAAACACAGGAAAAGAATGCATTAAGTATTTGAAGGAGCAACGTCTCCCTCCACAGACATTCATTCCTCTGCAATCTGTTCGTACAAAGCCAATAATTGAGAAACTGCGCACTTTGGGTGGTACTGCCCGGCTTGTGTTCGATGTAATCCATTTTGACCGATCTTTGGAGAGGGCTGTCTTATTTGCTGTTGGGAATACTCTTGTCTGTGATGATCTTGAAGAAGCTAAACTTCTTAGCTGGAGTGGGGAAAGGCAGAAGGTGGTCACCATAAATGGAATACTCCTATCAAAGTCAGGTACAATGACTGGTGGGTTAAGTGGTGGTATGGAAGCAAAGTCAAATAAGTGGGATGAGAGCACAATTGAGGCCTTTAAGAAAAAGAAGGATAAGTTGGAATCTGAAATGGATACACTTGGCTCACTTAGAGATTTGCAAATGAAAGAGTCTGAGATATCAGAAAGAATGTCTGGATTGGAGAAGAAGATCCATTTTTCCAAAAAAGAAGAAGAGAATATTAAGGTTAAGCTTTCAAAGATAAAGGAAGAAAAGGGTAATGTTGTAAATGAGATAGGTCGTATCAAACCAGAGCTTGAGAAGTTGGAAAGCCGTATTGCTAAGACAAGCGAAGACATCCGCAAACTTGAAAAAAGGATCAATGAGATTGCTGATAGAATTTACAAGGAATTCAGTGAGTCTGTTGGAGTTCAAAACATTCGTGAGTATGAAGAAAACCAACTTAAAGCTGCCCAGGAGATGTATGAAAGGAGGCAAAGCTTGTCCAAGCAGATGTCAAAATTAAAATATCAGTTGGAGTATGAACAAAAACGCAATATGGAGTCACCAATTGAAAAATTAAAGCTCTCTCTGGAATCTCTAGAGAAGGAATTAAAAGTGACACAGAAGAAAGAACATGATGCAAAACAAACAGCAGAATATATTGCAAATCAGATGGAAGAGTTGAGTGTTAAAGCAGATGAGTGGAAGGTTAAAACAGATGACAGTGGAAAGGATATTGAAGAGCTGAACAAGGTTAGAGGAAAAGTCATGGGAGACATATCAAAATTGAAGCGTGAGATAGCTTCAAAGGAGGCAAGGCTTGAGCAGCTACAAGCACATTGGCAGGTGATACTGGAGAAGTGCGAAATAGAACAATTAAAACTTCCAAAACTTGATGATCCTATGGAAGTTGAGACATTGCTTCCTGGAGCTGGGTTCGACTACAGTCAACTAAATAGATCATATTTGCATGATATGAGGCTTGCGGAAAGGGAAAAGCTCGAATTGGATTTCAGGCAAAAAATGGATTCTATAGTTTCCGAAATTGAACGTACAGCTCCCAACTTGAAAGCTTTGGATCAATATGAAGCTTTGCAAGTCAAAGAGAAGGAAGTAACTGAAAAGTTTGAAGCTATCAGAAAGGAAGAGAAAGAAGCATCTGATAAGTTTAATGCTGTAAGGCAAAGAAGATATGAGCTCTTTATGGAAGCTTTTGACCATGTTTCTACAAATATTGACCGAATTTACAAGCAATTAACAAAAAGTCATACACATCCTCTTGGCGGAACTGCTTACCTGAATCTTGAAAATGAGGATGAGCCCTTCTTGTACGGAATCAAATACACCGCCATGCCTCCAACAAAACGCTTCCGGGATATGGATCAGTTATCAGGTGGGGAGAAGACTGTTGCTGCACTTGCTCTTCTCTTCTCCATTCACGGCAATAATTGCAGCTATAAACCGTCTCCTTTCTTCATCCTCGATGAAGTGGATGCAGCACTGGATAATTTAAATGTTGCCAAGGTTGCTGGGTTCATCCGATCAAAATCGTGTAGTGTGGCTGGCAGGTCTGAGCAAAACGATGGTGAAACTGGGTGTGGCTTTCAAAGCATTGTCATTTCCTTGAAGGATACTTTCTATGATAAGGCTGAAGCACTGATTGGTGTTTACAGAGACTCAGAAAAGAGTTGTTCACAAACACTATCATTCGACTTGACAAAGTACAAGGAAGCCTGAGGTTTCAGTGGAGTTTGGATTATCGGCATGCGTACTGATATAGTTGAATGTTGTTTGTATTTGGTTATTTAGCTTCTTTTTGTGCATAGAGGCTTTTTATTGATTAATTTAACATATCTGATGAACTTATATAGCAGTGAGTCTGTTACTGGCGATGTTGATAGAAAAAGCCGCTCGGGGCTTGCTCTCTTGTAGATACAAAGCTGTTTTATCAAGTAAATGCTTAATTTTCATTTAATACCAAATTGTTATTTTAACATAGATACTATGCAAAC

Network for GWHGAAEX011960

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.18	SMC_N	10	1206	3.90E-48
PF06470.12	SMC_hinge	517	630	1.30E-23

Protein Sequence

>GWHPAAEX011960
MPSLVTQGKILRLELENFKSYKGRQMIGPFFDFTAIIGPNGSGKSNLMDAISFVLGVRSTHLRGAQLRDLIYASDDREKEQKGRRAFVRLVYQMGNGSELMFTRTITGTGSSEYRIDQKVVTWDEYNSKLRSLGILVKARNFLVFQGDVESIASKNPRELTALLEQISGSDELKKDYEELEELKAMAEEKSALVYQEKRTVVMERKQKKAQKEEAEKHLRLQDQLKLLKQDLFLWQLYNIEKDTEKLNLEVGNAKEELDGHNKKLKEHDQLLDAKKKEQNASLKEISLCEKNISKKKTELDQKQPELLKLKEATSRINSKIKSSKKELEKKREEKRKHEKEILKLENDLSDVKKALDELNERGQDGVAKLQLADSQVEEYHRIKEAAGTKTAKLKDEKEVLDRQLRAAEEACKNLHENLQELQSREQELSLQEEQLKAKLKIINEAIAKHEGEISRANKELKGIQTDSSSARGRYQSLKQKVEECDKKLRELKADKHESERDARLSETVQSLKRLFSGVHGRMTELCRPSQKKFNLAVTVAMGKFMDAIVVEDENTGKECIKYLKEQRLPPQTFIPLQSVRTKPIIEKLRTLGGTARLVFDVIHFDRSLERAVLFAVGNTLVCDDLEEAKLLSWSGERQKVVTINGILLSKSGTMTGGLSGGMEAKSNKWDESTIEAFKKKKDKLESEMDTLGSLRDLQMKESEISERMSGLEKKIHFSKKEEENIKVKLSKIKEEKGNVVNEIGRIKPELEKLESRIAKTSEDIRKLEKRINEIADRIYKEFSESVGVQNIREYEENQLKAAQEMYERRQSLSKQMSKLKYQLEYEQKRNMESPIEKLKLSLESLEKELKVTQKKEHDAKQTAEYIANQMEELSVKADEWKVKTDDSGKDIEELNKVRGKVMGDISKLKREIASKEARLEQLQAHWQVILEKCEIEQLKLPKLDDPMEVETLLPGAGFDYSQLNRSYLHDMRLAEREKLELDFRQKMDSIVSEIERTAPNLKALDQYEALQVKEKEVTEKFEAIRKEEKEASDKFNAVRQRRYELFMEAFDHVSTNIDRIYKQLTKSHTHPLGGTAYLNLENEDEPFLYGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHGNNCSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCSVAGRSEQNDGETGCGFQSIVISLKDTFYDKAEALIGVYRDSEKSCSQTLSFDLTKYKEA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06636	SMC1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	Biological Process	chromosome organization
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0005694	Cellular Component	chromosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	96.000
SRP064423	SRR2545915	Juvenile tuber	85.340
SRP108465	SRR5643513	five period of Gastrodia elata	51.740
	SRR5643514	five period of Gastrodia elata	47.290
	SRR5643515	five period of Gastrodia elata	46.750
	SRR5643524	five period of Gastrodia elata	48.490
	SRR5643525	five period of Gastrodia elata	47.560
	SRR5643528	five period of Gastrodia elata	41.020
	SRR5643658	five period of Gastrodia elata	52.480
	SRR5643659	five period of Gastrodia elata	49.880
	SRR5643660	five period of Gastrodia elata	51.190
	SRR5643661	five period of Gastrodia elata	45.360
	SRR5643662	five period of Gastrodia elata	52.680
	SRR5643663	five period of Gastrodia elata	64.560
	SRR5643664	five period of Gastrodia elata	62.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	64.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.890
SRP279888	Gastro	Gastrodia elata tuber	48.61
	Juven	Juvenile tuber	67.59
	Mother_Gastro	Mother tuber of Gastrodia elata	38.39
	Mother_Juven	Mother tuber of Juvenile	63.61