Detail information of GWHGAAEX011972/evm.TU.scaffold_4.320
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2291 | 0 | Oligosaccharyltransferase, alpha subunit (ribophorin I) |
| nr | gi|672170299|ref|XP_008805205.1| | 0 | PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Phoenix dactylifera] |
| Swissprot | tr|B9FDT1|OST1B_ORYSJ | 0 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B (Precursor) |
| trEMBL | tr|A0A067L7J4|A0A067L7J4_JATCU | 0 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 {ECO:0000256|RuleBase:RU361143} |
| TAIR | AT2G01720 | 0 | Ribophorin I |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 6958011 | 6997467 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011972
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04597.13 | Ribophorin_I | 38 | 463 | 4.30E-133 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12666 | OST1, RPN1 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 | ||
| Various types of N-glycan biosynthesis | map00513 | ||
| Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006486 | Biological Process | protein glycosylation |
| GO:0004579 | Molecular Function | dolichyl-diphosphooligosaccharide-protein glycotransferase activity |
| GO:0005783 | Cellular Component | endoplasmic reticulum |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.420 |
| SRR2545915 | Juvenile tuber | 49.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 53.980 |
| SRR5643514 | five period of Gastrodia elata | 56.680 | |
| SRR5643515 | five period of Gastrodia elata | 46.940 | |
| SRR5643524 | five period of Gastrodia elata | 59.260 | |
| SRR5643525 | five period of Gastrodia elata | 75.250 | |
| SRR5643528 | five period of Gastrodia elata | 87.260 | |
| SRR5643658 | five period of Gastrodia elata | 76.440 | |
| SRR5643659 | five period of Gastrodia elata | 29.180 | |
| SRR5643660 | five period of Gastrodia elata | 29.930 | |
| SRR5643661 | five period of Gastrodia elata | 31.980 | |
| SRR5643662 | five period of Gastrodia elata | 23.150 | |
| SRR5643663 | five period of Gastrodia elata | 24.280 | |
| SRR5643664 | five period of Gastrodia elata | 20.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 70.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 70.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.26 |
| Juven | Juvenile tuber | 65.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.98 | |
| Mother_Juven | Mother tuber of Juvenile | 77.15 |