Detail information of GWHGAAEX011974/evm.TU.scaffold_4.322


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16012.00E-40GATA-4/5/6 transcription factors
nrgi|731345341|ref|XP_010683872.1|8.01E-47PREDICTED: GATA transcription factor 8 [Beta vulgaris subsp. vulgaris]
Swissprottr|O82632|GATA9_ARATH7.00E-41GATA transcription factor 9
trEMBLtr|M0S4M4|M0S4M4_MUSAM9.00E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P02830_001}
TAIRAT4G328902.00E-40GATA transcription factor 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001171191297123001-
Transcript Sequence

Network for GWHGAAEX011974

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.26GATA1852181.60E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.200
SRR2545915Juvenile tuber36.180
SRP108465SRR5643513five period of Gastrodia elata63.900
SRR5643514five period of Gastrodia elata38.640
SRR5643515five period of Gastrodia elata104.360
SRR5643524five period of Gastrodia elata36.660
SRR5643525five period of Gastrodia elata116.580
SRR5643528five period of Gastrodia elata78.590
SRR5643658five period of Gastrodia elata81.430
SRR5643659five period of Gastrodia elata171.410
SRR5643660five period of Gastrodia elata161.290
SRR5643661five period of Gastrodia elata159.020
SRR5643662five period of Gastrodia elata135.830
SRR5643663five period of Gastrodia elata142.610
SRR5643664five period of Gastrodia elata102.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.700
SRR6049655Rhizomagastrodiae_C368-T10_good_144.420
SRR6049656Rhizomagastrodiae_C368-T07_good_157.730
SRR6049657Rhizomagastrodiae_C368-T07_good_145.340
SRR6049658Rhizomagastrodiae_C368-T04_good_134.960
SRR6049659Rhizomagastrodiae_C368-T04_good_125.600
SRR6049660Rhizomagastrodiae_C368-T01_good_153.760
SRR6049661Rhizomagastrodiae_C368-T04_good_144.000
SRR6049662Rhizomagastrodiae_C368-T01_good_172.610
SRR6049663Rhizomagastrodiae_C368-T01_good_174.900
SRR6049664Rhizomagastrodiae_C368-T10_good_158.490
SRR6049665Rhizomagastrodiae_C368-T10_good_158.490
SRP279888GastroGastrodia elata tuber 109.85
JuvenJuvenile tuber23.89
Mother_GastroMother tuber of Gastrodia elata 95.72
Mother_JuvenMother tuber of Juvenile 38.66