Detail information of GWHGAAEX011975/evm.TU.scaffold_4.324
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1897 | 0 | Damage-specific DNA binding complex, subunit DDB1 |
| nr | gi|743855638|ref|XP_010941529.1| | 0 | PREDICTED: DNA damage-binding protein 1a isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9M0V3|DDB1A_ARATH | 0 | DNA damage-binding protein 1a |
| trEMBL | tr|M0TNC3|M0TNC3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P07200_001} |
| TAIR | AT4G05420 | 0 | damaged DNA binding protein 1A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 7242376 | 7294060 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011975
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10433.8 | MMS1_N | 76 | 537 | 2.80E-119 |
| PF03178.14 | CPSF_A | 746 | 1058 | 3.40E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DDB1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10610 | DDB1 | Ubiquitin mediated proteolysis | map04120 |
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.560 |
| SRR2545915 | Juvenile tuber | 37.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.310 |
| SRR5643514 | five period of Gastrodia elata | 29.360 | |
| SRR5643515 | five period of Gastrodia elata | 25.810 | |
| SRR5643524 | five period of Gastrodia elata | 24.990 | |
| SRR5643525 | five period of Gastrodia elata | 16.370 | |
| SRR5643528 | five period of Gastrodia elata | 14.980 | |
| SRR5643658 | five period of Gastrodia elata | 17.170 | |
| SRR5643659 | five period of Gastrodia elata | 32.760 | |
| SRR5643660 | five period of Gastrodia elata | 35.340 | |
| SRR5643661 | five period of Gastrodia elata | 38.610 | |
| SRR5643662 | five period of Gastrodia elata | 34.390 | |
| SRR5643663 | five period of Gastrodia elata | 32.460 | |
| SRR5643664 | five period of Gastrodia elata | 43.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.73 |
| Juven | Juvenile tuber | 43.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.90 | |
| Mother_Juven | Mother tuber of Juvenile | 23.38 |