Gene detail

Detail information of GWHGAAEX011976/evm.TU.scaffold_4.325

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743855634\|ref\|XP_010941526.1\|	PREDICTED: auxin response factor 17-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6H6V4\|ARFF_ORYSJ	Auxin response factor 6
trEMBL	tr\|A0A067KP61\|A0A067KP61_JATCU	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR	AT5G37020	auxin response factor 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	7314367	7349165	-

Transcript Sequence
>GWHTAAEX011976 CTCTCTCTCTCTCTCTCTCTCTTCAGCTCGAGGGCTACTATCGAAGTACGGTTCTTGATCCAAGTTGAAAAGAAAACCCACTGTGATGCCTGATGGGAGCTGCAGGAGTCTTAGCCGTACTGGAGCTGATTGAAGAGGAATGGGAAATACCTTCGGATACTAATGTGTTTGGGTCAGGTTATGATGACATTTTTACCAGGAGAGAGAGAACCCATTTGTATCAGATGGAGCCTCTGTGCTAGAAATTTAAGTAGTTGCTGAAGAAAACGGGAATAGGTCTGCTTCTTCTGCATCCGTAGCATTCAGCATCTGTGAAGATGAGGCTCCCGTCATCTTCGTTGTCTTCTTCGGACTTAACCCAACAACCGCAAGAAGGTGAACAAAGGTGCTTGAATTCTGAACTATGGCATGCGTGTGCTGGCCCTCTTGTGTCATTGCCTGTGGTAGGAACTCGTGTGGTGTATTTTCCCCAAGGGCATAGTGAGCAGGTAGCTGCATCCACCAACAAGGAGATAGATTCTCATATTCCAAATTACCCATCTTTGCCTCCTCAGTTAATTTGTCAACTTCATGATGTTACAATGCATGCTGATGTTGAGACTGATGAAGTGTATGCTCAAATGACTTTGCAGCCACTTAGTCCGCAAGAGCAAAAGGATCCCTACCTACCTGCTGAATTGGGCGCAGCAAGTAAACAACCAACTAACTATTTCTGTAAAACATTGACTGCGAGTGACACAAGTACTCATGGTGGATTTTCTGTTCCACGACGGGCAGCTGAAAAAGTCTTCCCTCCATTGGATTTTTCACAGCAGCCTCCAGCACAAGAATTGATTGCTAGAGATCTGCATGGAAATGAGTGGAAATTTCGTCACATTTTTCGAGGCCAGCCAAAGAGGCATCTCCTCACAACTGGATGGAGTGTCTTTGTAAGTGCAAAGAGACTTGTTACTGGGGATTCTGTCCTTTTTATTTGGAATGAAAATAATCAGCTACTCCTTGGTATCAGGCGTGTGAATCGCCCGCAAACTGTAATGCCTTCATCAGTAATTTCAAGTGATAGCATGCATATAGGCCTTCTTGCTGCGGCTGCTCATGCCGCTGCCACTAATAGTCGGTTTACAATATTTTATAACCCAAGGGCATGTCCATCTGAATTTGTTATACCGTTAGCAAAGTATATTAAAGCAGTCTACCAAACTCGTGTCTCTGTGGGTATGAGATTTCGAATGCTCTTTGAGACGGAAGAGTCAAGCGTGAGAAGATATATGGGCACTATCACAGGCATAAGTGATCTGAATCCTGTCCACTGGCCAAATTCTCATTGGCGTTCTGTAAAGGTTGGCTGGGATGAGTCAACTGCTGCTGAGAGACAACTAAGGGTTTCTCTTTGGGAAATTGAGCCTCTAACTACATTTCCAATGTATCCCTCCCCTTTTTCTCTCAGACTCAAGCGTCCATGGCCCCCAGGGCTTCCTTCTCTCTATGGTGGAAACATGGGTGATATTGGATTGAATTCTGCTCTTGCCTGGCTTCGAGATAGTGGGAACTTGGGGGTACTGCCGTTAAATTTTCAGGGAATTGGGGTTTCACCTTATAATCAGCCAGTACTTGATAACTCATTGTTTGGCCTGAAGCCAGATATTTACCAGTCTACGACTATAGAGGCCATTCAAGATATGAGGACCATGGATTCCTTGAAACAGGTTCCTACCAGTTTACAGTTTCAGCATACTCCAAGCATCATCAGCAGACCCAACAATCTTCCATCAAACCAACCTCTTTTGCAATCCCAGTCACAACCTTTTGTTCAAATTTCTCAAGAAAACCAAGGCCATAACCACAATCAATCAAGCTTTCTTCACCAGAAATTACAACCATCCCCTTTATTTAGCGATCAGCAACAGCATTTAAAACAAATGCAGCAAGATTCACATGCTCAAAGACACCAACAGCAGCAGCAAAAACAATTTTATGATCAGTTAATTTCTGGCATTATGCCATGCCAAGCGATTCAAGCATCTGTGTCACAGCCCCCTTCCTCATCCCTGCAAAACATTTCTTCAATTTCACCACCTCAAACCTTTCCTGATTCCAATGGTAACTTTGTCACCACATCAGGAGAAACATCACTGAATGGTGTATTGCCGCCATTTTCATATGAAGAATCAAACCTTCTTAGTTCTTCAATGACCAGCTCACAAATTACTTCCAGCCCTTGGATCTCTAAACAAATTACCCTTGAGCCATTGATCCAATCAGGGAGTCAGTGTGTTCTACCACAGGTGGACCATTTAAGTTCCTTTTTTTCTGATGTTTCACGAGATGTTACTATGCTTCCACCATTTCCAGGTAGAGAATGCTCAAATAGCCATCAAAGTGTAGATCCCCAGCACCTTCTTTTTGGTGCAAACCTTGAATTCTCACCAATGCTAGAGCAGAATGGAGTGCCTGGCCTTAGGAATATGGGATGTGGGGTTAATAATGCTAGAGTGTCTCATGCTGGAAGTAATTTTTTGAGCACGACTGAAGTAGACTTTCAACTTAATCAAGCGCTCACCGGTTCTGGTGGGTCAGAGGAGTCAGCGCTTCTTCAGTCCCCAGATAATCTTGGGCAGGAGATTTCACAAAATGGAACTTATGTGAAGGTTTATAAATCAGGCACCTTTGGAAGGTCACTAGATATCACTAGGTATAACAGCTACCCTGAGCTACGGAGTGAGCTTGGGCGCCTTTTTTGCCTTGATTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTTGTCGGCGACGATCCTTGGCCGGAGTTCGTTAACAATGTGTGGTGCATCAAGATACTGTCCCTGCAGGAAGTGCAGCAGATGGCCAAGCAAGGTGTTAGTCTCGCAAACTCCGCGCCGCTGAGAAGGCTTTCCGCCGGAGGCTGCGACAACTACATCTCTCAGCAAGAGTCCGCGAGAAATCTGAGCTCTGAGATCCTCCCGGTTGGGTCTTTGGACTACTGAATCTTCTCTCTTTTCTCCCCTTTTTATTCACTTATTTTGCATGTGTTGGTTCTGCTGCCCCATCCTTCTCTGCTTCTCTGAGCTGAAACTCTTATCTTGTATTTTATGATGGCAAGCAAAACTTGTATTGTATCATCAGAAGACTCCCTTTTGTAGACTGCTTTAAGACATCTCCATTCCATTATTCTTAGTTCCCACTAAGCTATGCTATTTCTGTTTATGCTCATTTTGTTTTTTTCTGAGATATTAACACCCTGAACTTTATACTATTACATATGTTTCGCACCCAAACTATTATATTTACAGAAAAAAACACTGCCACCGTCACATTTACACATTTCTAAAGTGCATGACACCTCATA

Network for GWHGAAEX011976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	132	233	7.70E-23
PF06507.12	Auxin_resp	258	341	2.30E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	75.310
SRP064423	SRR2545915	Juvenile tuber	101.200
SRP108465	SRR5643513	five period of Gastrodia elata	70.180
	SRR5643514	five period of Gastrodia elata	78.340
	SRR5643515	five period of Gastrodia elata	68.640
	SRR5643524	five period of Gastrodia elata	89.790
	SRR5643525	five period of Gastrodia elata	88.790
	SRR5643528	five period of Gastrodia elata	86.350
	SRR5643658	five period of Gastrodia elata	109.070
	SRR5643659	five period of Gastrodia elata	99.490
	SRR5643660	five period of Gastrodia elata	88.000
	SRR5643661	five period of Gastrodia elata	87.570
	SRR5643662	five period of Gastrodia elata	81.770
	SRR5643663	five period of Gastrodia elata	98.000
	SRR5643664	five period of Gastrodia elata	88.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.420
SRP279888	Gastro	Gastrodia elata tuber	90.79
	Juven	Juvenile tuber	102.70
	Mother_Gastro	Mother tuber of Gastrodia elata	52.48
	Mother_Juven	Mother tuber of Juvenile	59.75