Gene detail

Detail information of GWHGAAEX011980/evm.TU.scaffold_4.332

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681882\|ref\|YP_001865078.1\|	3.00E-96	ABC transporter [Nostoc punctiforme PCC 73102]
KOG	KOG0055	3.00E-150	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|743872272\|ref\|XP_010906500.1\|	2.33E-179	PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like isoform X4 [Elaeis guineensis]
Swissprot	tr\|Q9AT00\|AB13I_ARATH	5.00E-165	Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic (Precursor)
trEMBL	tr\|W1PZJ2\|W1PZJ2_AMBTC	5.00E-171	Uncharacterized protein {ECO:0000313\|EMBL:ERN13589.1}
TAIR	AT1G65410	3.00E-150	non-intrinsic ABC protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	7633861	7662362	-

Transcript Sequence
>GWHTAAEX011980 AAAACATGCAACTTTCGCAGTTTTTTTAGAGCCCTACATGCACATGTCCTACTCTACTCCCGAGAGCAAGTCCTTCAGCATATCGAGTAATTCAGTCTATTCGGTTCCTGCATCGAGATCGGTCCCTTCTAGCATTCGTCACAGCTTCTCTAGATTCGATTCTCTCTTTTTTTCTTTCCTCAACGAATGGAGTGACACAGCTCCTCCAAATTTAATCTTTCATCCCTATTAGTTGATGTTAAGATCCTCCGTTCAGCCTAAATTTCGCTTTGGTATTTCTTATTCCTGAGATGTCGAGCGTTGCGTTATATTGGGCAAATTCATGGAGTATACCCATGACATTTCCTAAGGATTCTTCGCGAGCTGGGGTTTCATTGCCAAGCCGCAAGAGCCAGTTTCAATGCTCGTCCAGAAGGAAAATTCCTTGCGCCTCCACGGCGCCTCCAAGAAATTTGGGACACGGCCTTACTTCCTTAGAAAGCAATAGCTCCAATGTCACGGAGAACTTAGCAGAATGTACAGATGCCAACAATGAAACCAACATTCTTATCGAGTGTAGAGATATTCACAAATATTATGGAGAGAAGCAAATCTTACGAGGTTTGAGCTTCAAGATTAGACATGGCGAAGCTGTGGGAATAATTGGTCCTTCCGGAACTGGAAAATCTACAGTGCTCAAGATCATGGCCGGTTTACTGGCTCCAGACAAGGGGGAGGTTCTTATATGTGGAAGGAAAAGACATGGATTAGTTGATGATGAGGAGATAGCAGGTCTTCGAATTGGCTTGGTTTTTCAGAGTGCAGCGCTTTTTGATTCACTTACGGTTCGTGAAAATGTTGGTTTTCAACTGTATGAAAGTTCAAAGATGCCACATGATAAGATAGCAGAACTTGTCAAGGAGAATCTCGAGGCTGTAGGGCTAAAGGGAGTGGAGGATAAGTTGCCTTCTGAGTTATCTGGCGGTATGAAGAAACGGGTGGCTTTAGCCAGATCTATTATTTTTGACAACACAAAGGAGGCAATTGAGCCAGAGGTGTTACTATACGACGAACCCACAGCAGGATTGGATCCCATTGCCTCCACTGTTGTAGAAGATCTCATCCGCTCCGTGCATCTGGAAGGAGAGAACACCGATGGAAGGCTTGGAAAGATTGCCTCTTATGTTGTTGTTACCCATCAGCATAGCACCATCAGAAGAGCCGTTGACCGGTTGCTTTTTTTGTATGATGGGAAGATCGTTTGGGAAGGAATGACTCATGAATTCACCACTTCAACAAATCCCATTGTTAAGCAGTTTGCTTCAGGGAGTTTAGATGGACCAATCAAGTATTGAAAAGCCTTTTTGTCATTATCATCTCAACCATTGGAAATTTATTAAAGCTGAGAAGAATTTTGGGCATTTCGGCAACTGCAGGAATGCCATGAAATTCTTTCAAATGTGCATACGTTTTATAGAAGAGAAGATTATGAGGCCTGAAGAAGCTTATGCTGAGACCCTTCATTTTTTATTTTTTGGTTTTTTTTTATTGAGAATACATTTGTAAAAACTCCAATATTTGACTTAAAAAGTCTATGCATATTATGTAATATTTAGTGGGCGTTAATTTGAGTCATGTGTATTGCATAATATGCTTATTATACGCTGTAAACATTTATTGAGAACTATTTAAGAGCAAATAAATTTTCTTTCAGC

Network for GWHGAAEX011980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	102	257	1.10E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.980
SRP064423	SRR2545915	Juvenile tuber	10.310
SRP108465	SRR5643513	five period of Gastrodia elata	8.090
	SRR5643514	five period of Gastrodia elata	10.370
	SRR5643515	five period of Gastrodia elata	8.830
	SRR5643524	five period of Gastrodia elata	8.490
	SRR5643525	five period of Gastrodia elata	10.500
	SRR5643528	five period of Gastrodia elata	10.750
	SRR5643658	five period of Gastrodia elata	9.250
	SRR5643659	five period of Gastrodia elata	9.930
	SRR5643660	five period of Gastrodia elata	11.190
	SRR5643661	five period of Gastrodia elata	10.140
	SRR5643662	five period of Gastrodia elata	11.590
	SRR5643663	five period of Gastrodia elata	11.090
	SRR5643664	five period of Gastrodia elata	9.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.810
SRP279888	Gastro	Gastrodia elata tuber	11.98
	Juven	Juvenile tuber	7.44
	Mother_Gastro	Mother tuber of Gastrodia elata	12.71
	Mother_Juven	Mother tuber of Juvenile	7.75