Gene detail

Detail information of GWHGAAEX011981/evm.TU.scaffold_4.333

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|46446374\|ref\|YP_007739.1\|	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Candidatus Protochlamydia amoebophila UWE25]
nr	gi\|602181972\|gb\|AHN91473.1\|	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Dendrobium catenatum]
Swissprot	tr\|Q6K8J4\|ISPG_ORYSJ	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|X2KWX1\|X2KWX1_9ASPA	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase {ECO:0000313\|EMBL:AHN91473.1}
TAIR	AT5G60600	4-hydroxy-3-methylbut-2-enyl diphosphate synthase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	7672229	7712275	-

Transcript Sequence
>GWHTAAEX011981 ATGAAGACAGCTGCAGCCATTTCAGCCTATTTTCCTTCTCTGAAGGCTATTGATTATGATTTGAGCTCTGCAAACAGAGTAGATTTTGCAAATTTTGCTTCTGATCTGAATTCCAAAAAGTCAAGACACTGCAGTAGAAAGGTTTTGGTGATTAAGAATTTGAGTTCTAGGTCAGACACGGCTGAGTTGCAATTTGCTTCTCAAGGAAGGCCTCTCTTAGCGCCTCGGCAAAAATACTGTGAATCTGTTCATAAGACTGTTCGGAGAAAGACTCGCACAATTATGGTGGGAAATGTAGCTCTTGGAAGTGAACATCCCATTCGTGTTCAAACAATGACTACTTCTGATACAAAAAATGTGCCTAAAACTGTGGAAGAGGTAATGAGGATAGCTGATAAAGGAGCAGATCTTGTTCGGATAACAGTTCAAGGGAAGAGAGAAGCTGATGCTTGCTTTGAAATTAAAAATTCTCTTGTTAAAAAAAACTATAATATTCCTCTAGTAGCAGACATACATTTCGCCCCTTCAATTGCATTGAGAGTTGCTGAATGCTTTGATAAAATTCGTGTTAACCCTGGGAATTTTGCTGATAGACGAGCACAATTTGAGAAACTAGAGTATACTGAAGAAGATTATCAAAAGGAGATTGAGCACATTGAAGAGGTAGAGTCTGCGTTTGAGTTTGCAAGGATATGCCAGAAATTAAATTTCCACAATTTTGTCTTTTCAATGAAAGCTAGTAACCCTGTAGTCATGGTTCAAGCCTATCGCTTACTTGTAGCAGAAATGTATGTTCAAGGTTGGGATTATCCCCTTCATTTAGGAGTAACTGAAGCTGGGGAAGGAGAGGATGGGCGAATGAAATCTGCAATCGGCATCGGAACACTCCTTCAGGATGGTTTGGGGGATACTATTAGGGTTTCCCTTACCGAGCCACCAGAAGCAGAGATTGACCCTTGCAGGAAATTGGCAAGCTTGGGCATGAGAGCTGCAAATACTCAAAAAGGAGTGGCTCCTTTTGAAGAGAACAGTCGTCATTATTTTGATTTCCAAAGAAGAAGTGGTCAGCTACCAGTTCAGAAGGAGGGTGAAGATGTTGATTATCGAGGGGTTTTGCATCGTGATGGTTCTGTACTTATGTCAGTCTCCTTAAATCAACTCAAAACACCAGAACTTCTCTATAGGTCGCTGCAAGCAAAGCTTGTAGTTGGAATGCCATTCAAGGATCTTGCAACAGTTGACTCCATTCTCTTACGTGAGCTTCCTCTTGTAGACGATACTGATGCTAGATTAGCTCTTAAAAGACTGATTGACATAAGCATGGGCATTTTGGTTCCCTTGTCAGAACAACTTACAAAACCCCTTCAGAATGCCATTGTTCTTGTTAATCTAAAGGAACTTACAACTGGCGTTTACAAACTATTGCCAAAAGGCACAAGGCTAGCAGTGACTGTTCGTGGAGATGAGGGATTTGAGGAGTTAGATGCCCTTAAGAGCGTTGGCGACATCACTATGTTGCTGCATTGTCTTTCGTGTGTTAATGAAGAGATTGGCAGAGTTCATACTTCTCGGAGACTGTTTGAATATCTGCAAGAAAACTCTTTGAACTTCCCTGTAATTCACCATCTACAGTTTCCAGTTGGAATAGAGAGAGATGATTTAGTCATTGGTGCTGGGAGTGAAGCTGGTGCTTTATTGGTGGATGGTCTCGGTGATGGCATACTTATCGAAGCTCCAGGCCATGATTTTGATTTTTTGAGAGATACTTCGTTCAACTTGCTCCAAGGTTGCAGGATGCGCAATACAAAAACTGAGTATGTGTCATGCCCCTCTTGCGGGCGCACACTCTTTGACCTTCAAGATATTAGCGCTCAGATAAGAGAGAAGACGTCTCACTTACCTGGTGTTTCAATTGCTATTATGGGTTGCATTGTTAATGGGCCGGGTGAGATGGCTGATGCTGACTTTGGATATGTTGGTGGTGCTCCAGGAAAGATTGACCTTTATGTTGGAAAGATGGTTGTGAAGCGAGGCATCGCCATGGATAGTGCGACTGAAGCTTTGATTCAGCTCATTAAAGAACACGGCCGTTGGGTGGATCCTCCAGCAGAAGAGCAGCAGTAG

Network for GWHGAAEX011981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04551.13	GcpE	91	206	8.60E-40
PF04551.13	GcpE	222	694	5.30E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03526	gcpE, ispG	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0044237	Biological Process	cellular metabolic process
GO:0016114	Biological Process	terpenoid biosynthetic process
GO:0008299	Biological Process	isoprenoid biosynthetic process
GO:0005506	Molecular Function	iron ion binding
GO:0046429	Molecular Function	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	117.770
SRP064423	SRR2545915	Juvenile tuber	73.350
SRP108465	SRR5643513	five period of Gastrodia elata	83.690
	SRR5643514	five period of Gastrodia elata	91.320
	SRR5643515	five period of Gastrodia elata	74.160
	SRR5643524	five period of Gastrodia elata	90.190
	SRR5643525	five period of Gastrodia elata	63.900
	SRR5643528	five period of Gastrodia elata	75.920
	SRR5643658	five period of Gastrodia elata	62.910
	SRR5643659	five period of Gastrodia elata	81.060
	SRR5643660	five period of Gastrodia elata	91.650
	SRR5643661	five period of Gastrodia elata	77.340
	SRR5643662	five period of Gastrodia elata	95.520
	SRR5643663	five period of Gastrodia elata	94.300
	SRR5643664	five period of Gastrodia elata	91.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	137.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	112.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	154.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	207.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	158.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	162.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	229.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	211.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	145.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	142.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	100.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	100.820
SRP279888	Gastro	Gastrodia elata tuber	103.33
	Juven	Juvenile tuber	388.11
	Mother_Gastro	Mother tuber of Gastrodia elata	62.00
	Mother_Juven	Mother tuber of Juvenile	110.97