Detail information of GWHGAAEX011983/evm.TU.scaffold_4.335


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|383762497|ref|YP_005441479.1|2.00E-69putative glutamine amidotransferase subunit PdxT [Caldilinea aerophila DSM 14535 = NBRC 104270]
KOGKOG32103.00E-99Imidazoleglycerol-phosphate synthase subunit H-like
nrgi|720027858|ref|XP_010264707.1|3.27E-120PREDICTED: pyridoxal biosynthesis protein PDX2-like [Nelumbo nucifera]
Swissprottr|Q8LAD0|PDX2_ARATH8.00E-110Pyridoxal biosynthesis protein PDX2
trEMBLtr|F6GTZ8|F6GTZ8_VITVI7.00E-118Putative uncharacterized protein {ECO:0000313|EMBL:CCB43662.1}
TAIRAT5G605403.00E-99pyridoxine biosynthesis 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001177665717791055+
Transcript Sequence

Network for GWHGAAEX011983

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01174.18SNO52181.10E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08681pdxT, pdx2 Vitamin B6 metabolism map00750

Gene Ontology

GO term OntologyName
GO:0042819Biological Processvitamin B6 biosynthetic process
GO:0042823Biological Processpyridoxal phosphate biosynthetic process
GO:0004359Molecular Functionglutaminase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.170
SRR2545915Juvenile tuber123.210
SRP108465SRR5643513five period of Gastrodia elata95.310
SRR5643514five period of Gastrodia elata82.250
SRR5643515five period of Gastrodia elata91.940
SRR5643524five period of Gastrodia elata88.000
SRR5643525five period of Gastrodia elata84.980
SRR5643528five period of Gastrodia elata70.710
SRR5643658five period of Gastrodia elata69.410
SRR5643659five period of Gastrodia elata100.100
SRR5643660five period of Gastrodia elata113.070
SRR5643661five period of Gastrodia elata105.870
SRR5643662five period of Gastrodia elata98.100
SRR5643663five period of Gastrodia elata99.460
SRR5643664five period of Gastrodia elata97.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_192.690
SRR6049655Rhizomagastrodiae_C368-T10_good_173.740
SRR6049656Rhizomagastrodiae_C368-T07_good_1102.440
SRR6049657Rhizomagastrodiae_C368-T07_good_1119.650
SRR6049658Rhizomagastrodiae_C368-T04_good_1110.680
SRR6049659Rhizomagastrodiae_C368-T04_good_1122.050
SRR6049660Rhizomagastrodiae_C368-T01_good_1122.630
SRR6049661Rhizomagastrodiae_C368-T04_good_1116.470
SRR6049662Rhizomagastrodiae_C368-T01_good_170.600
SRR6049663Rhizomagastrodiae_C368-T01_good_183.180
SRR6049664Rhizomagastrodiae_C368-T10_good_166.220
SRR6049665Rhizomagastrodiae_C368-T10_good_166.220
SRP279888GastroGastrodia elata tuber 99.55
JuvenJuvenile tuber118.63
Mother_GastroMother tuber of Gastrodia elata 62.04
Mother_JuvenMother tuber of Juvenile 67.80