Detail information of GWHGAAEX011987/evm.TU.scaffold_4.342
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37523925|ref|NP_927302.1| | 3.00E-32 | hypothetical protein gll4356 [Gloeobacter violaceus PCC 7421] |
| KOG | KOG0266 | 0 | WD40 repeat-containing protein |
| nr | gi|695076785|ref|XP_009385699.1| | 0 | PREDICTED: transcriptional corepressor LEUNIG-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FUY2|LEUNG_ARATH | 0 | Transcriptional corepressor LEUNIG |
| trEMBL | tr|C5XVA2|C5XVA2_SORBI | 0 | Putative uncharacterized protein Sb04g036910 {ECO:0000313|EMBL:EES07740.1} |
| TAIR | AT2G32700 | 0 | LEUNIG_homolog |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 7945246 | 7979290 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011987
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08513.10 | LisH | 10 | 35 | 1.50E-06 |
| PF00400.31 | WD40 | 516 | 549 | 0.00025 |
| PF00400.31 | WD40 | 562 | 591 | 0.0033 |
| PF00400.31 | WD40 | 598 | 635 | 0.00027 |
| PF00400.31 | WD40 | 680 | 715 | 3.00E-05 |
| PF00400.31 | WD40 | 762 | 798 | 0.054 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LUG |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 226.560 |
| SRR2545915 | Juvenile tuber | 214.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 123.770 |
| SRR5643514 | five period of Gastrodia elata | 101.170 | |
| SRR5643515 | five period of Gastrodia elata | 111.610 | |
| SRR5643524 | five period of Gastrodia elata | 100.980 | |
| SRR5643525 | five period of Gastrodia elata | 125.190 | |
| SRR5643528 | five period of Gastrodia elata | 112.530 | |
| SRR5643658 | five period of Gastrodia elata | 156.850 | |
| SRR5643659 | five period of Gastrodia elata | 93.590 | |
| SRR5643660 | five period of Gastrodia elata | 88.460 | |
| SRR5643661 | five period of Gastrodia elata | 79.710 | |
| SRR5643662 | five period of Gastrodia elata | 91.350 | |
| SRR5643663 | five period of Gastrodia elata | 117.940 | |
| SRR5643664 | five period of Gastrodia elata | 106.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 135.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 160.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 135.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 145.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 163.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 180.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 137.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 163.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 107.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 122.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 111.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 111.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 134.84 |
| Juven | Juvenile tuber | 177.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 114.41 | |
| Mother_Juven | Mother tuber of Juvenile | 151.63 |