Gene detail

Detail information of GWHGAAEX011988/evm.TU.scaffold_4.343

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743837581\|ref\|XP_010936445.1\|	PREDICTED: COBRA-like protein 4 [Elaeis guineensis]
Swissprot	tr\|Q9LFW3\|COBL4_ARATH	COBRA-like protein 4 (Precursor)
trEMBL	tr\|A9PI47\|A9PI47_POPTR	Phytochelatin synthetase-like family protein {ECO:0000313\|EMBL:ERP52226.1}
TAIR	AT5G15630	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	7979413	7981236	+

Transcript Sequence
>GWHTAAEX011988 CCAAACAACACTATAATCATAATTTTGGATTAGATCAGTGTATTTTGCATTAATTTAGACAATTTTATTATATTTTTGTCACTATAGTTTAGCAAAATATAAAAAAATGAAATCTTAACCATCACCACATTCATGCCACAGACCCTATGAATGAAGAACTGACTCGTTAGCTTCCAGATGACCGTTGGAACATCTCTTTCAAACATCCTACCTCTCTTCTCTCTCTCCCTCCACCAAACTCTTTGCTTCGCAACAGAGACAGTAGAAAACTAGAACGCTACTCATGAACTTGCGATTAGGAGTAGCCAACAAACTAGTAGGTCAGCCATAGCATCCACAAACACCATATGACTTCTCTCCCTTCTTCCTTCCTCTCTTTAAAACCTCTCATGGAGCACCGAAGCTTCTGAGCTTCCATCAATGGAGCTGGATGTCGCCTCTACGAAAAGATCCCAAGGGTGTCTGGAATTCCGGCAAATAAGATGGATGCTCTCTTCCACGTTGTTTGCCCTGCTGCTGTGTTCTGCTGCGGGCTACGACCCGCTGGACCCGACCGGCAATATCACAGTGAAGTGGGACGTAATGTCCTGGACTCCTGATGGATATGTGGCCGTAGTGACATTAAACAACTTCCAAATGTACCGTCACATAATGACCCCGGGCTGGACCTTAGGCTGGAGCTGGGCTAAGAAGGAGGTGATATGGTCGATGGTGGGCGCCCAGACGACGGAGCAGGGCGACTGCTCGAAGTTCAAAGGGAACATCCCGCACTGCTGCAAGAAGAGCCCCATGGTGGTGGACCTGCTCCCGGGGGTGCCCTATAATCAGCAGATAGCTAACTGCTGCAAGGGCGGGGTGCTGGCAGCGTGGGGTCAGGACCCAGCAGCTTCGGTTGGAGCCTTCCAGCTGAGCGTCGGCCTGGCCGGCACGTCCAACAAGACGGTGAAGCTCCCTAAGAACTTCACCCTGCTGGGGCCCGGCCCGGGCTACACCTGCGGCCCCGCAAAGATCGTCCCTTCCACTGCCTTCCTCACCCCCGACCGCAGGCGCAGAACCCAAGCCCTCATGACCTGGAACCTGACCTGCACCTACTCGCAGTTCCTCGCGTCCAAGGCCCCCTCCTGCTGCGTCTCCCTCTCCTCCTTCTACAATGACTCCATCATCCCCTGTCCAAAGTGCGCCTGCGGCTGTCACAGCAGGGGCGGCGGCTGCGTCGAGGAAGGGGCGAAGCCGACGTTGCAGTGCACGGCGCACATGTGCCCGGTTCGGGTGCACTGGCACGTGAAGGTCAATTACAAGGATTACTGGCGGGCGAAGATCACGATCACGAACTTCAATTACCGTCTCAACTACACCGGGTGGACGCTCGTGGTGCAGCACCCCAACCTCGGCAGAGTGGCCCAAGTGTTCAGCTTCGAGTACAGGCCTCTGGTGCCCTACCAGTCCATAAACGACACTGGCATGTTCTACGGGATGAAGTACTACAACGACCTGCTGATGGAGGCAGGGCCGTCCGGGAACGTGCAGTCGGAGGTGCTCCTTGAGAAGGAAGAGAGGGAAGATGCGTTTACCCTCAAGAAAGGATGGGCTTTCCCGCGAAAGGTGTACTTCAATGGCGATGAATGCATGCTGCCGTCGCCGGACGCGTATCCTCGTCTGCCCAATTCTGCTCCGGTGGCGATGATGTGCAGCGCAGGCTTTAAATCCGTTTTGGTTGCTTCCGTGCTCTGCTTCATTGTCTTAGTGAAAGGTTTAGATAATTCACATTTAAATATCGGGGTGTTGCTATTTATTTGAGGGGTAATACTTTTTTTTTTTTTTTTT

Network for GWHGAAEX011988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04833.14	COBRA	62	225	5.00E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0010215	Biological Process	cellulose microfibril organization
GO:0031225	Cellular Component	anchored component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.810
SRP064423	SRR2545915	Juvenile tuber	0.290
SRP108465	SRR5643513	five period of Gastrodia elata	0.520
	SRR5643514	five period of Gastrodia elata	0.490
	SRR5643515	five period of Gastrodia elata	0.450
	SRR5643524	five period of Gastrodia elata	0.830
	SRR5643525	five period of Gastrodia elata	48.370
	SRR5643528	five period of Gastrodia elata	30.030
	SRR5643658	five period of Gastrodia elata	181.690
	SRR5643659	five period of Gastrodia elata	0.640
	SRR5643660	five period of Gastrodia elata	1.090
	SRR5643661	five period of Gastrodia elata	0.710
	SRR5643662	five period of Gastrodia elata	1.050
	SRR5643663	five period of Gastrodia elata	1.460
	SRR5643664	five period of Gastrodia elata	0.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.530
SRP279888	Gastro	Gastrodia elata tuber	2.41
	Juven	Juvenile tuber	1.26
	Mother_Gastro	Mother tuber of Gastrodia elata	0.98
	Mother_Juven	Mother tuber of Juvenile	1.14