Detail information of GWHGAAEX011990/evm.TU.scaffold_4.345
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226313252|ref|YP_002773146.1| | 6.00E-16 | naringenin-chalcone synthase [Brevibacillus brevis NBRC 100599] |
| nr | gi|695000205|ref|XP_009410745.1| | 1.56E-174 | PREDICTED: 3-ketoacyl-CoA synthase 3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LZ72|KCS21_ARATH | 3.00E-150 | 3-ketoacyl-CoA synthase 21 |
| trEMBL | tr|M0S1K1|M0S1K1_MUSAM | 2.00E-170 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT5G04530 | 1.00E-149 | 3-ketoacyl-CoA synthase 19 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 8150178 | 8151992 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011990
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 26 | 313 | 8.50E-98 |
| PF08541.9 | ACP_syn_III_C | 323 | 404 | 5.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.850 |
| SRR2545915 | Juvenile tuber | 3.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.350 |
| SRR5643514 | five period of Gastrodia elata | 3.540 | |
| SRR5643515 | five period of Gastrodia elata | 4.060 | |
| SRR5643524 | five period of Gastrodia elata | 4.820 | |
| SRR5643525 | five period of Gastrodia elata | 0.890 | |
| SRR5643528 | five period of Gastrodia elata | 1.150 | |
| SRR5643658 | five period of Gastrodia elata | 1.240 | |
| SRR5643659 | five period of Gastrodia elata | 6.440 | |
| SRR5643660 | five period of Gastrodia elata | 5.870 | |
| SRR5643661 | five period of Gastrodia elata | 5.110 | |
| SRR5643662 | five period of Gastrodia elata | 2.780 | |
| SRR5643663 | five period of Gastrodia elata | 5.220 | |
| SRR5643664 | five period of Gastrodia elata | 2.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.51 |
| Juven | Juvenile tuber | 2.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.79 | |
| Mother_Juven | Mother tuber of Juvenile | 15.40 |