Gene detail

Detail information of GWHGAAEX012001/evm.TU.scaffold_4.360

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|694995951\|ref\|XP_009391287.1\|	6.36E-103	PREDICTED: F-box protein PP2-B1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9ZVR5\|PP2B2_ARATH	6.00E-62	Putative F-box protein PP2-B2
trEMBL	tr\|M0TDA4\|M0TDA4_MUSAM	5.00E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P36620_001}
TAIR	AT2G02250	2.00E-61	phloem protein 2-B2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	8454038	8457851	-

Transcript Sequence
>GWHTAAEX012001 AAAAGATAAGTCAGAGAAAGGATAGAAGAAGATATCAAGCAAGATGGAAGTAGAGGGAAATGACACCAACATCAGCTGCATCCAGAAGCTGCCGGAAGATTGCTTATCGCGCGCAATATCGCTGACATCTCCTCGATATTCGTGCAGATCGGAGGCGGTATCGACTGCGTTTCGATCTGCGGCGACTTCCGACGATGTCTGGAAGTGTTTTTTGCCGGCTGATTATGAAGAGATCCTCGCTCGAGCCGTCTATCCGGTGGATTTTTCCTCCTTGAAGCAACTCTACTTTCGCCTTTGCGATCCAATCCTCATCGACGGAGGGAACATGGGCTTTACTTTGGATAGAGAGACTGGGGCCAAGTGCTTCATCCTGTCCGCCAAAGAGCTTGGAATTGTGTGGGGAGATACTGAACAATATTGGAGTTGGATGCATGATCCTGATTCAAGGTTTTCTGAAGTGGCTGAGCTAAGGAATGTTTGCTGGCTGGAGATCCGCGGCAGGATCAGCTCAAGGCAGCTCTCCAAACGCACAAACTATGTAGCTTATCTCATATTCAAATTATCAAACACTGCGACTGGACTGAGGCATCCTCTCCAGGAGGGATCAGTATCCATAGGAGCCCACCTCTCAAAGAACACAGTTTGCCTGATGGATTCCGAAGATTCTTACTGGTCGCCGCCCATATGGCCCTTCTGGCGCCGGCCTCGCATCTCGGCGAACGTCTTCCAGCACCACCCAACTTTTGCGCGAGAGCCGGCTGAAGATTTGGGAGAGCCAATTGGCGGGGGTGACGCGGTGGCCGAACGACAGGAAGATAACTCAGAGGAGGGAGAGGAGGAGCCAGAATGCGGCTTTGTGCGAGAAGCGCGGGAAGGGGGGCGAGAAGAAGCGGAGATGGGGCGAAACACGACGGGTAAGCCGAACAAGAGGCGCGATGGGTGGTTGGAAATAATGCTGGGGGAGTTCTACAATGAGGAAGGGGATGATGGGGAAGTTGATATGTCCCTGATGGAGGTCAAGGGGGGGAACTGGAAGCAAGGCCTTACTGTGCAGGGAATAGAAATTAGGCCTAAGAAGTGATGGTGTAGTGAGGTTTCCCAGCCTTCACGGGAGGGGAACGATTTGGGTGTACAGCATATTTTATTGAAGTTCGAATTATGCTCGTGAGATTCCAAAATAATTGCAGCCGGGATTAAAACTATTCATATTTCTCTGTTCAGCTTACTATTCTAATATATTTATTTATACAGTGAGAGAGATATTTGGAGTATAAGTCCAAGGAAGTTAATGGTTTGTGCTACTCTATAGTAGTTAATGCAGTCTTTCTTTAAGAAATGCATCTTTCTGAACACTCTTAGAAAGCAATTCCAATCCAACTCATAGTCTCTGTCCAACTCATTGTTACAACTTTGTTTATTACTTTTAGTATTGTAATGCTAAAATATTTTTCGCATTTTTCTTCAGTTCTTAATATTAGCTTGTTCCCAAAAACTTTATAAATACTTTTAGAACCTTATTTTGCACAATACCTTATATAAAAGTCGGCATGATAATAAGATATGACTTTTATATACTCTTTATTGATGAGTGTTTCTACCTAACCTTTTTTTTTCTTATATTGATCTCAAGTTTAATGACTAGTTTAGAAGAGGATGGAGATAAGAGTGCTCATTAGAAGGTTTAATGATTTAATTTTATGTTGTCTTAGAGACTTGTAATATTTTGAACTATTGTATTATATTATTTTGTAGATAATTGTATTATGATTAAGTATGGATCTATGGTTGGTGCTTTTGATGTTTGATTGAAAATTTTTTAATTATTTCCTCGTAGTTTCTCAACCTTCATCCTCTGGCACCACATGTATATAAGAATGTCCATACAAGATGGGGCATATAATTTGTAGTATGTCCATTATGTATGGATCAAAGGCCACTTGGATGATTTGAGATTAGAAGTTAGCAAATTGATTAATGCATAGTATATAACAACTATTATGTAACAATTAGCTTGATCCATAGTTGTTCAATTAACTCCAATTGGATAGATAAAATACAATATTACTATATTCAAATATTGTAGAAATGAGAACATTTAGACAATCCAAATAGTATTGAGTGATAT

Network for GWHGAAEX012001

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.5	PP2	105	343	1.40E-51

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.210
SRP064423	SRR2545915	Juvenile tuber	32.910
SRP108465	SRR5643513	five period of Gastrodia elata	44.270
	SRR5643514	five period of Gastrodia elata	45.510
	SRR5643515	five period of Gastrodia elata	55.730
	SRR5643524	five period of Gastrodia elata	53.720
	SRR5643525	five period of Gastrodia elata	144.470
	SRR5643528	five period of Gastrodia elata	155.330
	SRR5643658	five period of Gastrodia elata	86.200
	SRR5643659	five period of Gastrodia elata	54.710
	SRR5643660	five period of Gastrodia elata	48.930
	SRR5643661	five period of Gastrodia elata	58.160
	SRR5643662	five period of Gastrodia elata	71.960
	SRR5643663	five period of Gastrodia elata	53.050
	SRR5643664	five period of Gastrodia elata	135.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.210
SRP279888	Gastro	Gastrodia elata tuber	41.00
	Juven	Juvenile tuber	27.17
	Mother_Gastro	Mother tuber of Gastrodia elata	101.17
	Mother_Juven	Mother tuber of Juvenile	86.94