Detail information of GWHGAAEX012005/evm.TU.scaffold_4.366


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-62FOG: Predicted E3 ubiquitin ligase
nrgi|672131389|ref|XP_008789253.1|1.84E-108PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Phoenix dactylifera]
Swissprottr|Q9LT17|BBR_ARATH3.00E-70E3 ubiquitin ligase BIG BROTHER-related
trEMBLtr|M0SL81|M0SL81_MUSAM1.00E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P05140_001}
TAIRAT3G199101.00E-62RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001186552318685674-
Transcript Sequence

Network for GWHGAAEX012005

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22342701.60E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms91.470
SRR2545915Juvenile tuber82.510
SRP108465SRR5643513five period of Gastrodia elata87.860
SRR5643514five period of Gastrodia elata90.330
SRR5643515five period of Gastrodia elata84.690
SRR5643524five period of Gastrodia elata83.010
SRR5643525five period of Gastrodia elata112.150
SRR5643528five period of Gastrodia elata100.150
SRR5643658five period of Gastrodia elata111.220
SRR5643659five period of Gastrodia elata80.820
SRR5643660five period of Gastrodia elata94.480
SRR5643661five period of Gastrodia elata98.700
SRR5643662five period of Gastrodia elata94.060
SRR5643663five period of Gastrodia elata88.870
SRR5643664five period of Gastrodia elata108.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_194.910
SRR6049655Rhizomagastrodiae_C368-T10_good_150.360
SRR6049656Rhizomagastrodiae_C368-T07_good_191.420
SRR6049657Rhizomagastrodiae_C368-T07_good_193.900
SRR6049658Rhizomagastrodiae_C368-T04_good_189.070
SRR6049659Rhizomagastrodiae_C368-T04_good_194.360
SRR6049660Rhizomagastrodiae_C368-T01_good_192.040
SRR6049661Rhizomagastrodiae_C368-T04_good_185.180
SRR6049662Rhizomagastrodiae_C368-T01_good_188.270
SRR6049663Rhizomagastrodiae_C368-T01_good_197.590
SRR6049664Rhizomagastrodiae_C368-T10_good_198.270
SRR6049665Rhizomagastrodiae_C368-T10_good_198.270
SRP279888GastroGastrodia elata tuber 136.20
JuvenJuvenile tuber110.91
Mother_GastroMother tuber of Gastrodia elata 124.65
Mother_JuvenMother tuber of Juvenile 123.64