Detail information of GWHGAAEX012011/evm.TU.scaffold_4.376
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291298907|ref|YP_003510185.1| | 3.00E-20 | ABC transporter-like protein [Stackebrandtia nassauensis DSM 44728] |
| KOG | KOG2355 | 4.00E-150 | Predicted ABC-type transport, ATPase component/CCR4 associated factor |
| nr | gi|743835957|ref|XP_010935958.1| | 2.27E-167 | PREDICTED: ABC transporter I family member 19-like [Elaeis guineensis] |
| Swissprot | tr|Q3EDJ0|AB19I_ARATH | 1.00E-150 | ABC transporter I family member 19 |
| trEMBL | tr|C5XV77|C5XV77_SORBI | 3.00E-166 | Putative uncharacterized protein Sb04g036680 {ECO:0000313|EMBL:EES07729.1} |
| TAIR | AT1G03900_2 | 4.00E-150 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 8947191 | 8983394 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012011
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00005.26 | ABC_tran | 37 | 181 | 1.20E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12608 | CAF16 | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016887 | Molecular Function | ATPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.650 |
| SRR2545915 | Juvenile tuber | 25.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.030 |
| SRR5643514 | five period of Gastrodia elata | 28.040 | |
| SRR5643515 | five period of Gastrodia elata | 26.850 | |
| SRR5643524 | five period of Gastrodia elata | 27.750 | |
| SRR5643525 | five period of Gastrodia elata | 21.900 | |
| SRR5643528 | five period of Gastrodia elata | 22.060 | |
| SRR5643658 | five period of Gastrodia elata | 22.440 | |
| SRR5643659 | five period of Gastrodia elata | 22.480 | |
| SRR5643660 | five period of Gastrodia elata | 20.140 | |
| SRR5643661 | five period of Gastrodia elata | 20.910 | |
| SRR5643662 | five period of Gastrodia elata | 20.030 | |
| SRR5643663 | five period of Gastrodia elata | 17.260 | |
| SRR5643664 | five period of Gastrodia elata | 15.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.85 |
| Juven | Juvenile tuber | 18.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.79 | |
| Mother_Juven | Mother tuber of Juvenile | 15.64 |