Detail information of GWHGAAEX012016/evm.TU.scaffold_4.385


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00092.00E-28Ubiquitin-like/40S ribosomal S30 protein fusion
nrgi|661881573|emb|CDP14733.1|3.30E-36unnamed protein product [Coffea canephora]
Swissprottr|P49689|RS30_ARATH7.00E-2940S ribosomal protein S30
trEMBLtr|A0A068V4G4|A0A068V4G4_COFCA1.00E-36Coffea canephora
TAIRAT5G566702.00E-28Ribosomal protein S30 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001191300909130456-
Transcript Sequence

Network for GWHGAAEX012016

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04758.13Ribosomal_S303593.30E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02983RP-S30e, RPS30 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms618.150
SRR2545915Juvenile tuber716.050
SRP108465SRR5643513five period of Gastrodia elata3744.110
SRR5643514five period of Gastrodia elata4452.780
SRR5643515five period of Gastrodia elata3321.500
SRR5643524five period of Gastrodia elata3057.760
SRR5643525five period of Gastrodia elata8417.910
SRR5643528five period of Gastrodia elata2995.150
SRR5643658five period of Gastrodia elata2682.220
SRR5643659five period of Gastrodia elata1793.030
SRR5643660five period of Gastrodia elata2003.690
SRR5643661five period of Gastrodia elata1737.810
SRR5643662five period of Gastrodia elata2241.080
SRR5643663five period of Gastrodia elata1914.530
SRR5643664five period of Gastrodia elata1763.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11383.710
SRR6049655Rhizomagastrodiae_C368-T10_good_13701.210
SRR6049656Rhizomagastrodiae_C368-T07_good_11711.410
SRR6049657Rhizomagastrodiae_C368-T07_good_11302.050
SRR6049658Rhizomagastrodiae_C368-T04_good_11247.690
SRR6049659Rhizomagastrodiae_C368-T04_good_11051.350
SRR6049660Rhizomagastrodiae_C368-T01_good_1982.040
SRR6049661Rhizomagastrodiae_C368-T04_good_1872.250
SRR6049662Rhizomagastrodiae_C368-T01_good_11683.400
SRR6049663Rhizomagastrodiae_C368-T01_good_11653.870
SRR6049664Rhizomagastrodiae_C368-T10_good_11892.830
SRR6049665Rhizomagastrodiae_C368-T10_good_11892.830
SRP279888GastroGastrodia elata tuber 4,146.15
JuvenJuvenile tuber5,219.01
Mother_GastroMother tuber of Gastrodia elata 4,270.06
Mother_JuvenMother tuber of Juvenile 3,340.25