Detail information of GWHGAAEX012017/evm.TU.scaffold_4.387
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-177 | FOG: PPR repeat |
| nr | gi|695049664|ref|XP_009412775.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FIT7|PP442_ARATH | 4.00E-178 | Pentatricopeptide repeat-containing protein At5g61990, mitochondrial (Precursor) |
| trEMBL | tr|A5BUC8|A5BUC8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN81487.1} |
| trEMBL | tr|A5BUC8|A5BUC8_VITVI | 1.00E-77 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN81487.1} |
| TAIR | AT5G61990 | 1.00E-177 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 9135305 | 9153213 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012017
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 264 | 296 | 7.40E-10 |
| PF13041.5 | PPR_2 | 303 | 352 | 1.80E-17 |
| PF13041.5 | PPR_2 | 374 | 422 | 1.50E-14 |
| PF12854.6 | PPR_1 | 440 | 472 | 3.00E-08 |
| PF13041.5 | PPR_2 | 478 | 526 | 1.10E-14 |
| PF13041.5 | PPR_2 | 548 | 596 | 2.30E-12 |
| PF12854.6 | PPR_1 | 614 | 647 | 9.30E-09 |
| PF13041.5 | PPR_2 | 653 | 702 | 1.10E-17 |
| PF12854.6 | PPR_1 | 719 | 751 | 2.40E-10 |
| PF13041.5 | PPR_2 | 761 | 806 | 2.10E-14 |
| PF13041.5 | PPR_2 | 827 | 876 | 9.20E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.410 |
| SRR2545915 | Juvenile tuber | 7.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.230 |
| SRR5643514 | five period of Gastrodia elata | 5.600 | |
| SRR5643515 | five period of Gastrodia elata | 5.430 | |
| SRR5643524 | five period of Gastrodia elata | 5.520 | |
| SRR5643525 | five period of Gastrodia elata | 6.260 | |
| SRR5643528 | five period of Gastrodia elata | 4.760 | |
| SRR5643658 | five period of Gastrodia elata | 6.110 | |
| SRR5643659 | five period of Gastrodia elata | 6.250 | |
| SRR5643660 | five period of Gastrodia elata | 6.580 | |
| SRR5643661 | five period of Gastrodia elata | 5.280 | |
| SRR5643662 | five period of Gastrodia elata | 6.170 | |
| SRR5643663 | five period of Gastrodia elata | 6.300 | |
| SRR5643664 | five period of Gastrodia elata | 6.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.73 |
| Juven | Juvenile tuber | 7.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.85 | |
| Mother_Juven | Mother tuber of Juvenile | 7.95 |