Detail information of GWHGAAEX012018/evm.TU.scaffold_4.389_evm.TU.scaffold_4.390


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19464.00E-54RNA polymerase I transcription factor UAF
nrgi|743762398|ref|XP_010907943.1|1.85E-162PREDICTED: uncharacterized protein At5g08430-like isoform X10 [Elaeis guineensis]
Swissprottr|Q9SIV5|C3H19_ARATH2.00E-70Zinc finger CCCH domain-containing protein 19
trEMBLtr|M0T1R3|M0T1R3_MUSAM4.00E-157Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P25880_001}
TAIRAT5G63700_24.00E-54Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001192230319294099+
Transcript Sequence

Network for GWHGAAEX012018

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03126.17Plus-33664687.60E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.300
SRR2545915Juvenile tuber23.350
SRP108465SRR5643513five period of Gastrodia elata17.460
SRR5643514five period of Gastrodia elata16.290
SRR5643515five period of Gastrodia elata14.920
SRR5643524five period of Gastrodia elata15.660
SRR5643525five period of Gastrodia elata10.240
SRR5643528five period of Gastrodia elata10.870
SRR5643658five period of Gastrodia elata10.210
SRR5643659five period of Gastrodia elata14.580
SRR5643660five period of Gastrodia elata17.650
SRR5643661five period of Gastrodia elata13.890
SRR5643662five period of Gastrodia elata15.010
SRR5643663five period of Gastrodia elata16.910
SRR5643664five period of Gastrodia elata15.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.710
SRR6049655Rhizomagastrodiae_C368-T10_good_119.340
SRR6049656Rhizomagastrodiae_C368-T07_good_119.900
SRR6049657Rhizomagastrodiae_C368-T07_good_122.490
SRR6049658Rhizomagastrodiae_C368-T04_good_121.970
SRR6049659Rhizomagastrodiae_C368-T04_good_122.870
SRR6049660Rhizomagastrodiae_C368-T01_good_122.960
SRR6049661Rhizomagastrodiae_C368-T04_good_122.460
SRR6049662Rhizomagastrodiae_C368-T01_good_122.170
SRR6049663Rhizomagastrodiae_C368-T01_good_121.630
SRR6049664Rhizomagastrodiae_C368-T10_good_122.030
SRR6049665Rhizomagastrodiae_C368-T10_good_122.030
SRP279888GastroGastrodia elata tuber 20.12
JuvenJuvenile tuber20.27
Mother_GastroMother tuber of Gastrodia elata 15.94
Mother_JuvenMother tuber of Juvenile 17.15