Detail information of GWHGAAEX012020/evm.TU.scaffold_4.393
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|126700010|ref|YP_001088907.1| | 7.00E-15 | hypothetical protein CD630_23950 [Clostridium difficile 630] |
| KOG | KOG0231 | 1.00E-69 | Junctional membrane complex protein Junctophilin and related MORN repeat proteins |
| nr | gi|743833843|ref|XP_010935364.1| | 0 | PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6F6B5|ARC3_ARATH | 3.00E-147 | Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 (Precursor) |
| trEMBL | tr|M0S4V9|M0S4V9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P03680_001} |
| TAIR | AT1G75010 | 1.00E-69 | GTP binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 9400468 | 9513488 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012020
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02493.19 | MORN | 624 | 640 | 6.2 |
| PF02493.19 | MORN | 642 | 663 | 0.0011 |
| PF02493.19 | MORN | 665 | 687 | 0.00011 |
| PF02493.19 | MORN | 692 | 709 | 7.3 |
| PF02493.19 | MORN | 712 | 733 | 0.0083 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.460 |
| SRR2545915 | Juvenile tuber | 14.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.900 |
| SRR5643514 | five period of Gastrodia elata | 10.150 | |
| SRR5643515 | five period of Gastrodia elata | 9.090 | |
| SRR5643524 | five period of Gastrodia elata | 10.730 | |
| SRR5643525 | five period of Gastrodia elata | 8.280 | |
| SRR5643528 | five period of Gastrodia elata | 7.840 | |
| SRR5643658 | five period of Gastrodia elata | 10.120 | |
| SRR5643659 | five period of Gastrodia elata | 9.370 | |
| SRR5643660 | five period of Gastrodia elata | 9.370 | |
| SRR5643661 | five period of Gastrodia elata | 8.590 | |
| SRR5643662 | five period of Gastrodia elata | 9.730 | |
| SRR5643663 | five period of Gastrodia elata | 10.090 | |
| SRR5643664 | five period of Gastrodia elata | 9.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.68 |
| Juven | Juvenile tuber | 8.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.52 | |
| Mother_Juven | Mother tuber of Juvenile | 10.16 |