Gene detail

Detail information of GWHGAAEX012023/evm.TU.scaffold_4.396

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307153162\|ref\|YP_003888546.1\|	3.00E-53	cytochrome P450 [Cyanothece sp. PCC 7822]
KOG	KOG0157	0	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
nr	gi\|743855078\|ref\|XP_010941218.1\|	0	PREDICTED: ent-kaurenoic acid oxidase 1-like [Elaeis guineensis]
Swissprot	tr\|Q9AXH9\|KAO1_HORVU	0	Ent-kaurenoic acid oxidase 1
trEMBL	tr\|I1H1W6\|I1H1W6_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G51780.1}
TAIR	AT1G05160	0	cytochrome P450, family 88, subfamily A, polypeptide 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	9747549	9779214	-

Transcript Sequence
>GWHTAAEX012023 AAAAAAAATAAAAAAAGTTATTATAGTTTGAACGAATTATTTTATTAGATAAAGGGGCAGTCTAGTAGCCTACAGCCAAGCAGAAAGCTTCACAGTTTCACCCGAAGAGGGAAAGAGGGAAGAGAGGAAAGAATGCGAGCATCCGTGATCGAGCTTTTTGAATCTGGCTGGATTGTTGCCATAGCAGTTGGGGCTGCTGCGGGATTGTGCAAGGCGGTGCGATTGATCCATCAATGGTCGCACGAGAGGAACATCGACGATGACCTGCGTCGTCGGCTTCCTCCCGGGGATCTTGGATGGCCTTTCATTGGCAACATGTGGGCGTTTCTCCGAGCTTTCAAGTTCGGTCACCCCGATTCTTTCATCGATTCCTTTGTTCGGAGATATGGCCGAATTGGGATTTACAAGTCATTTATGTTCGGAAGCCCAACAATTTTGGTTACTATACCTAAAACCTGCAAACAAGTATTGATGGATGATGAGAACTTTGAACAAGGATGGCCTAAGGCTACTCTTGAACTTATTGGAAAGAGGTCCTTCATAGGAATTTCTCCTGAGCAGCACAAGCGGCTGAAGAAACAGACATCAGCTTCTATCAATGGTTTTGATGCACTTACCTCATACCTGAAGTTCATTGAACAAACCGTTATATCTACTCTGGAAAAGTGGGCAGATATGGGACAAATCGAATTTCTTAATGAGATTCGAAGACTTACATTTCGGATTATAATGCATATTTTTCTTAAGACAGAGAGTGACAGTGTAATGGAGTCTTTGGAAAGAGTATATACTGATCTCAACTATGGAATGAGAGCAATGGCAATCAATATTCCCGGATTTGCATATCATAGGGCCCTGAAGGCTAGGAAGAAATTGGTGGAAATCCTTCAAGCGTCTCTGGACAAAAGGAGAGCTTCAAGGACCAGAGAACATTCTGAGAAGGTAAATGACTTGATGGACGCCTTAATTGATGCTGAAAATGAAAATGGTAGGAGATTGGATGATGAACAAATCATTGACACATTGATCATGTACCTCAATGCTGGTCATGAATCTTCCGGACACATCACTATGTGGGCCACCATATTCCTGCAAGAAAACCAAGAATATTTTGAAAAGGCTAAGGCTGAGCAGGAAGAAATCAGGAGAAATATGCCACCCACACAGAAGGGCTTAAAGCTCAAGGATGTTCGAAAAATGGAATATCTTTCTAAGGTTATTGATGAGACGCTAAGGGTAGTAAACATCTCCTTCGTGGCTTTTCGGCAAGCAACTTCTAATGTTTTCGTCAATGGATACTTGATTCCAAAAGGGTGGAAAGTGCAGACATGGTATCGGAGCGTCCACATGGATCCTGAAGTTTATCCAGATCCTAAGAAGTTCGATCCTTCTAGATGGGATGATCTCATACCAATGGCTGGGACCTTTCTTCCATTTGGAGCTGGAAGCAGGCTTTGTCCAGGAAATGACCTTGCCAAGTTAGAGATCTCCGTTTTCCTTCATTATTTTCTCCTGGGTTACAAGCTCGATCGGGTCAACCCAGACTGCCAAGTGAGATACTTGCCTCACCCAAGACCAACAGATAAATGCCTGGCAAAGGTCATTAAGCTCTATTAGTAGCCTTGCCTATCCAAAGCATATTTTCCCTAATCCTTCAAAATGATTGAATGCTAAACTAATAAACAATTATGTATAATCCGTTTATTTATGAGGTTTTTTCTGGGTTTATATTTTCTTATATAACTATTAAAGCAGTTGTTTGGTTGCCAATGCTATGTTATCTTCTAATAGCAGCCAGATAACAACCATTTGGTTCGCTGCTATTGCGAGATAACATTGAAAAAATTGCCAAAAAATTGCTACTGCGTTATGTTATTCAAATATTACTTCAAGACTACTGCTATCTTCGATTAACACTCTCGGCTTGTGTTCATCTTATGAATATTAATGTTTTGATGCTGATTTTATATTATTTAAAGCTTTATAACCATA

Network for GWHGAAEX012023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.21	p450	50	466	3.60E-61

Protein Sequence

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP88A4

KEGG pathway

KO	Enzyme	pathway	mapID
K04123	KAO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0004497	Molecular Function	monooxygenase activity
GO:0020037	Molecular Function	heme binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	Molecular Function	iron ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.510
SRP064423	SRR2545915	Juvenile tuber	78.830
SRP108465	SRR5643513	five period of Gastrodia elata	25.560
	SRR5643514	five period of Gastrodia elata	38.200
	SRR5643515	five period of Gastrodia elata	31.360
	SRR5643524	five period of Gastrodia elata	34.870
	SRR5643525	five period of Gastrodia elata	59.830
	SRR5643528	five period of Gastrodia elata	70.670
	SRR5643658	five period of Gastrodia elata	71.880
	SRR5643659	five period of Gastrodia elata	38.100
	SRR5643660	five period of Gastrodia elata	38.270
	SRR5643661	five period of Gastrodia elata	35.230
	SRR5643662	five period of Gastrodia elata	35.440
	SRR5643663	five period of Gastrodia elata	48.890
	SRR5643664	five period of Gastrodia elata	41.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.510
SRP279888	Gastro	Gastrodia elata tuber	41.97
	Juven	Juvenile tuber	29.17
	Mother_Gastro	Mother tuber of Gastrodia elata	21.62
	Mother_Juven	Mother tuber of Juvenile	18.58