Detail information of GWHGAAEX012024/evm.TU.scaffold_4.397
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-163 | FOG: PPR repeat |
| nr | gi|720061997|ref|XP_010275359.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nelumbo nucifera] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 2.00E-163 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|I1I790|I1I790_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G36470.1} |
| TAIR | AT5G66520 | 7.00E-163 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 9790418 | 9792345 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012024
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 83 | 112 | 0.029 |
| PF01535.19 | PPR | 185 | 212 | 0.0022 |
| PF01535.19 | PPR | 259 | 284 | 3.50E-05 |
| PF13041.5 | PPR_2 | 285 | 331 | 1.40E-08 |
| PF01535.19 | PPR | 359 | 381 | 0.22 |
| PF14432.5 | DYW_deaminase | 458 | 581 | 2.00E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.610 |
| SRR2545915 | Juvenile tuber | 7.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.690 |
| SRR5643514 | five period of Gastrodia elata | 9.470 | |
| SRR5643515 | five period of Gastrodia elata | 8.920 | |
| SRR5643524 | five period of Gastrodia elata | 10.060 | |
| SRR5643525 | five period of Gastrodia elata | 6.190 | |
| SRR5643528 | five period of Gastrodia elata | 5.300 | |
| SRR5643658 | five period of Gastrodia elata | 4.050 | |
| SRR5643659 | five period of Gastrodia elata | 16.300 | |
| SRR5643660 | five period of Gastrodia elata | 17.400 | |
| SRR5643661 | five period of Gastrodia elata | 17.510 | |
| SRR5643662 | five period of Gastrodia elata | 12.770 | |
| SRR5643663 | five period of Gastrodia elata | 13.300 | |
| SRR5643664 | five period of Gastrodia elata | 15.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.27 |
| Juven | Juvenile tuber | 20.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.51 | |
| Mother_Juven | Mother tuber of Juvenile | 11.35 |