Detail information of GWHGAAEX012027/evm.TU.scaffold_4.400
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|206901421|ref|YP_002251463.1| | 9.00E-06 | RNA-binding region RNP-1 [Dictyoglomus thermophilum H-6-12] |
| KOG | KOG0154 | 8.00E-180 | RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains |
| nr | gi|743844028|ref|XP_010938226.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 5-B [Elaeis guineensis] |
| Swissprot | tr|Q9LHP2|SL30A_ARATH | 4.00E-08 | Serine/arginine-rich SC35-like splicing factor SCL30A |
| trEMBL | tr|M0S051|M0S051_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P15430_001} |
| TAIR | AT3G54230 | 8.00E-180 | suppressor of abi3-5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 9881468 | 9901879 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 288 | 345 | 4.30E-11 |
| PF00076.21 | RRM_1 | 450 | 516 | 2.80E-16 |
| PF01585.22 | G-patch | 970 | 1012 | 5.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.360 |
| SRR2545915 | Juvenile tuber | 36.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.040 |
| SRR5643514 | five period of Gastrodia elata | 22.970 | |
| SRR5643515 | five period of Gastrodia elata | 23.650 | |
| SRR5643524 | five period of Gastrodia elata | 21.660 | |
| SRR5643525 | five period of Gastrodia elata | 22.650 | |
| SRR5643528 | five period of Gastrodia elata | 21.540 | |
| SRR5643658 | five period of Gastrodia elata | 27.980 | |
| SRR5643659 | five period of Gastrodia elata | 24.820 | |
| SRR5643660 | five period of Gastrodia elata | 27.770 | |
| SRR5643661 | five period of Gastrodia elata | 23.690 | |
| SRR5643662 | five period of Gastrodia elata | 24.310 | |
| SRR5643663 | five period of Gastrodia elata | 26.510 | |
| SRR5643664 | five period of Gastrodia elata | 30.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 53.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.10 |
| Juven | Juvenile tuber | 41.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.64 | |
| Mother_Juven | Mother tuber of Juvenile | 48.96 |