Detail information of GWHGAAEX012028/evm.TU.scaffold_4.401_evm.TU.scaffold_4.402_evm.TU.scaffold_4.403


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG04460Vacuolar sorting protein VPS1, dynamin, and related proteins
nrgi|743855046|ref|XP_010941202.1|0PREDICTED: dynamin-related protein 1E-like [Elaeis guineensis]
Swissprottr|Q9FNX5|DRP1E_ARATH0Dynamin-related protein 1E
trEMBLtr|A0A067K1J2|A0A067K1J2_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP28913.1}
TAIRAT3G601900DYNAMIN-like 1E

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001199022649906791-
Transcript Sequence

Network for GWHGAAEX012028

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00350.22Dynamin_N332086.20E-53
PF01031.19Dynamin_M2184852.60E-59
PF02212.17GED5105991.60E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.990
SRR2545915Juvenile tuber12.340
SRP108465SRR5643513five period of Gastrodia elata6.320
SRR5643514five period of Gastrodia elata4.630
SRR5643515five period of Gastrodia elata12.530
SRR5643524five period of Gastrodia elata8.170
SRR5643525five period of Gastrodia elata17.550
SRR5643528five period of Gastrodia elata62.560
SRR5643658five period of Gastrodia elata18.960
SRR5643659five period of Gastrodia elata20.730
SRR5643660five period of Gastrodia elata10.570
SRR5643661five period of Gastrodia elata15.650
SRR5643662five period of Gastrodia elata27.090
SRR5643663five period of Gastrodia elata18.570
SRR5643664five period of Gastrodia elata33.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.870
SRR6049655Rhizomagastrodiae_C368-T10_good_14.430
SRR6049656Rhizomagastrodiae_C368-T07_good_13.510
SRR6049657Rhizomagastrodiae_C368-T07_good_14.070
SRR6049658Rhizomagastrodiae_C368-T04_good_13.370
SRR6049659Rhizomagastrodiae_C368-T04_good_13.720
SRR6049660Rhizomagastrodiae_C368-T01_good_17.870
SRR6049661Rhizomagastrodiae_C368-T04_good_13.730
SRR6049662Rhizomagastrodiae_C368-T01_good_16.170
SRR6049663Rhizomagastrodiae_C368-T01_good_17.200
SRR6049664Rhizomagastrodiae_C368-T10_good_15.370
SRR6049665Rhizomagastrodiae_C368-T10_good_15.370
SRP279888GastroGastrodia elata tuber 4.05
JuvenJuvenile tuber5.35
Mother_GastroMother tuber of Gastrodia elata 85.86
Mother_JuvenMother tuber of Juvenile 320.44