Gene detail

Detail information of GWHGAAEX012031/evm.TU.scaffold_4.406

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|514754456\|ref\|XP_004963041.1\|	1.21E-46	PREDICTED: B3 domain-containing protein Os12g0592300-like [Setaria italica]
Swissprot	tr\|Q2QMT2\|Y1223_ORYSJ	2.00E-40	B3 domain-containing protein Os12g0592300
trEMBL	tr\|K3ZCZ3\|K3ZCZ3_SETIT	4.00E-47	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si024423m}
TAIR	AT4G33280	2.00E-16	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	10029315	10047933	+

Transcript Sequence
>GWHTAAEX012031 ATAACAGTTTTTATGTTCCGAACCAATCCTCTTTATGTGCTTTTGTATAAACCTAAACCCTTCATTTTTCAGTCAACCTCCTCCGGTTTTTTTATCCTAAACGCTGAGATCCTCTTCCCGGATGCCGACGTCCCGACACCGAAGACACTTTTTGTTCGCATTGAAGGCCGGTCTCTTCCTCCTTCGCTGCCAAATTGCGACCTAATTTCTTAAATTTATTCAATACTATTCACAAGTACTGACGACGTCGCAGAGGAGCCAAGAAGCCTCCCACGCTCGTCTACGCATAATCTAACAAGGGTTTGATACAAAACGACCATCTTCATCAGGGTTTCACTATGGAAGAGGAATGCAGGCATTGCATGAAGTGGAAGGAGCACTGTAGGAAGTTTGAAGAACACTTCTATTGGGACCATGTGGATGCGAAGATGATGCACTTCTCAAAGTTAATGACTGGAGATTTCTCCAGCTGCATGGTCATACCAAAGAAGTTTATAGATCACTTCAAGGGCGAACTTCTCAAAACTATTGAACTAAAGGTTCCAAGTGGTGATAAATGGCATGTTGAATTGAAGAACAGTTGTGATGGAGTTGTTCTAGACAGTGGATGGAGGAATTTTGTTTTGGCTCATGGCATTCAAGAAAATGACACATTGGTGTTCAAGTATGATGGTTGTTCTTCCTTCATTGTGTTGATGTTTGAGAAAGGTGGCTGTGAGAAAGCATCTTCTTACTGTGCAAAGAAAAGGGATCCTATGGAAGATTCATGTATAATGGTCTCTAGCAAAAAGTTAGGACATGGTTGCTATGAAAGCTCTCATGAGCATTATGTGCAATCAGAACCTTTAATTGTGGTGCGGAAGTCAGCAAGGGAACACAGAGTCGCAAAAGAGAAGCAAGTCGGAAATAAATTGAATGCTAAAAGGATTCGTAGACGGAAAAAGCACTTCACTGGTACAAGGAGAAAGAAAAACTTCTATGAGCAAGAAAGTGAGATTTTAGAAGGCACCCTGAGCAACAGCAATGGTGTCTCTTTAGCTAATCTGTGCAACTCTAAGAAGTTCATCATTTCAAAAAAAGCAAGACTTACAGATGCAGAAATGAACATGGTGCTTAACTTAGCTGAAACAGTTAAATCAGATGGGCCTTCTTTTATATCAGTCATGGTTCCCTGCAGTGCTTTAAAGAGGTTTTATTTGACCATTCCAATGTCTTTCGCCGTGAAATACCTACCTCGAACGAGCTGCCGTATTCTCCTACAGCTGAGTGACAGGGAGAGGGTTTGGCCTGCTCAGTGCCTCGTTCAGAGGAACACAGTGGGCTTTTCTTCAGGATGGAAGGAATTTGTTCTAGAGCACCGGCTGAAAGTTGGGGATATCTGCCTCTTTGTGCTCCAAAAAGTGTATGAAGATGAAGCCCCAAGTATTTTTATGACCGTGCACATCAGCAGGGCTGAGCCTGTGTTGTTGTAGCTCCAAAAAAATAGCAAAAAAAGAAACAGAGATACAGGACAGCCGGAGAGGCATCCATCCAATGGTCCTGGATATTTTTTTCTTAATGTCCTGGCTAAACTGGAGTTTTTCATGCACTGGCAACTATCTGAAGTCTAGTCTAGTTATTCTGGTTTATTTATTTATTTTTATTTGTTGAAATATATATATTTTTAATAATCGTTTTAGGCTACATTTAATTTTAAGATGGTAGCTAAATAACTTGTTTTATGCACAATATTATTCATTAATGAAATTC

Network for GWHGAAEX012031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	41	123	1.30E-19
PF02362.20	B3	272	359	6.70E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.450
SRP064423	SRR2545915	Juvenile tuber	46.660
SRP108465	SRR5643513	five period of Gastrodia elata	33.620
	SRR5643514	five period of Gastrodia elata	35.200
	SRR5643515	five period of Gastrodia elata	28.610
	SRR5643524	five period of Gastrodia elata	30.340
	SRR5643525	five period of Gastrodia elata	27.590
	SRR5643528	five period of Gastrodia elata	30.350
	SRR5643658	five period of Gastrodia elata	27.070
	SRR5643659	five period of Gastrodia elata	34.160
	SRR5643660	five period of Gastrodia elata	31.820
	SRR5643661	five period of Gastrodia elata	30.170
	SRR5643662	five period of Gastrodia elata	30.670
	SRR5643663	five period of Gastrodia elata	33.870
	SRR5643664	five period of Gastrodia elata	32.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.180
SRP279888	Gastro	Gastrodia elata tuber	28.15
	Juven	Juvenile tuber	21.48
	Mother_Gastro	Mother tuber of Gastrodia elata	20.05
	Mother_Juven	Mother tuber of Juvenile	14.91