Detail information of GWHGAAEX012032/evm.TU.scaffold_4.407
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|317133044|ref|YP_004092358.1| | 1.00E-24 | serine/threonine protein kinase with PASTA sensor(s) [Ethanoligenens harbinense YUAN-3] |
| nr | gi|743887490|ref|XP_010910388.1| | 0 | PREDICTED: protein NSP-INTERACTING KINASE 3-like [Elaeis guineensis] |
| Swissprot | tr|Q93ZS4|NIK3_ARATH | 0 | Protein NSP-INTERACTING KINASE 3 (Precursor) |
| trEMBL | tr|A0A061E698|A0A061E698_THECC | 0 | Nsp-interacting kinase 3 isoform 1 {ECO:0000313|EMBL:EOY00540.1} |
| TAIR | AT1G60800 | 0 | NSP-interacting kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 10056422 | 10076251 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012032
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 38 | 77 | 2.40E-12 |
| PF13855.5 | LRR_8 | 129 | 188 | 1.40E-06 |
| PF00069.24 | Pkinase | 309 | 579 | 2.50E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.550 |
| SRR2545915 | Juvenile tuber | 15.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.410 |
| SRR5643514 | five period of Gastrodia elata | 18.500 | |
| SRR5643515 | five period of Gastrodia elata | 15.450 | |
| SRR5643524 | five period of Gastrodia elata | 15.490 | |
| SRR5643525 | five period of Gastrodia elata | 19.630 | |
| SRR5643528 | five period of Gastrodia elata | 15.640 | |
| SRR5643658 | five period of Gastrodia elata | 12.680 | |
| SRR5643659 | five period of Gastrodia elata | 12.660 | |
| SRR5643660 | five period of Gastrodia elata | 12.360 | |
| SRR5643661 | five period of Gastrodia elata | 10.440 | |
| SRR5643662 | five period of Gastrodia elata | 7.490 | |
| SRR5643663 | five period of Gastrodia elata | 7.000 | |
| SRR5643664 | five period of Gastrodia elata | 8.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.61 |
| Juven | Juvenile tuber | 23.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.00 | |
| Mother_Juven | Mother tuber of Juvenile | 10.30 |