Gene detail

Detail information of GWHGAAEX012035/evm.TU.scaffold_4.410

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|222480914\|ref\|YP_002567151.1\|	5.00E-87	DEAD/DEAH box helicase [Halorubrum lacusprofundi ATCC 49239]
KOG	KOG0952	0	DNA/RNA helicase MER3/SLH1, DEAD-box superfamily
nr	gi\|672123304\|ref\|XP_008785008.1\|	0	PREDICTED: probable ATP-dependent DNA helicase HFM1 [Phoenix dactylifera]
Swissprot	tr\|Q588V7\|TEB_ARATH	2.00E-28	Helicase and polymerase-containing protein TEBICHI
trEMBL	tr\|F6HUX6\|F6HUX6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58494.1}
TAIR	AT3G27730	0	ATP binding;ATP-dependent helicases;DNA helicases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	10261751	10338427	-

Transcript Sequence
>GWHTAAEX012035 ATGATATATTTAAAAGTTGGGAATCTTCTCTTTTGCGTTTATAGTTTTGATGAGATGATATCATCCATGGACTCGTATGCTCTGAGATCTGTATTGGAGTTACCTGCCCCATTTCGTTCCATGTTTAGTTTCAGGTACTTCAATTCGTTACAGAGCGAATGCTTTTCTGGGTGCTTTCTTTCCGATATAAACATGGTCATATCAGCGCCAACTGGTAGTGGGAAAACAGTGCTTTTTGAGCTCTGCATACTCCGGCTCTTTTCAAAATTTCTCTCTCCAGAAGGAAAGTTTAATCACGAGAAAGGGCTTCTTAAAACGATCTATATAGCTCCATCCAAGGCCTTGGTTCAGGAAAAGCTTCGCAACTGGAATATGAAACTTACTACCTGGGGATTTATCTGTTTGGAGTTGACTGCTGACAATGAATCTTATAGTACAAAGAACATACGTGAAGCTGATATCATTTTAACAACTCCAGAGAAATTTGATGCCGTAACTCGCAATGGGGTTAGAGATGGAGGGCTTAGCTTCTTTAGTGATATATCACTTGTTCTAATTGATGAAGTTCATCTACTTAATGATCAACGCGGTGCTGCTTTAGAAGCAATAGTTAGCAGAATAAAGATGCTTTCTCGAAGCAAAGAGATGACATATAGTCCCCTGGCTAGTGTTCGTTTCATAGCAGTTTCAGCTACAATTCCAAATGTGGAAGATCTTGCGGAATGGCTTCTGATTCCATCAGAAGGTATCAAAAGATTTGGAGAAGAGATGAGACCAGTGAAGCTGGTGACAAAAGTTTTTGGCTATGCTCCAGCTAAGAATGATTTCCTATTTGAAAAGCGTCTTCAAAACTTTGTTTTCGATATCCTTATGCAACATTCAAGAGGAAAGTCTGCACTTGTTTTCTGTTCAACAAGAAAAGGAGCACAAGAAACGGCACAGCATCTCTCTCAGGTTGTTTCAAGGCTTGGACATTCCAATCCATTCATAGGATCAAATGAGCAACGGGAAAAACTAAAGGAAGCCTCTTTATCTTGCGGTGATAAACAAATGCAGTCATGCATTCTCTATGGTGTTGGCTATCACAATGGTGGTCTTTGCCTGAAAGATCGCAACCTCATTGAGGGTCTTTTTCTGAAGGGGGATCTTCAAATTCTTTGTACTACAAATACTCTTGCCCATGGAGTTAACTTGCCTGCTCACACTGTAGTGATTAAATCAACTCAATACTTCAATAAGGAAAAGGGACTATGCCTGGAATATGATCGGTCTATGGTGTTACAGATGTGTGGAAGGGCTGGCCGTCCACCATTTGATGATACTGGTTTGGTTATAATCATGACCAGAAGAGCAACAGTTCATTTGTATGAAAATCTTTTAAATGGCTGTGAAATGGTGGAATCTCAGTTAATGTCATGCGCAATGGAACATCTTGCTGCTGAAATTGTTCAGCTAACAATTTCTGATATTAGTTTGGCTATCGAGTGGTTAAAATGTTCCTACTTGTATGTTAGGATTAAGAAGAATCCTGAGAACTATGGATTAAAGAGGGGGATTCCATGCATAAATCTGGAAAAATATATGCGAGAAATATGTGTTCAGAACATTAACGAATTAGCAGAATACGGGATGATTTGGATAGATGAGGATGGTTTCCTTGTTAAGCCGTTAGAACCTGGAAGGTTAATGACAAAATTTTATTTGAAGTTTTCAACAATGAAAAATATCATTGAAGCTCCTGGAAGTAGCAGTTTAGAAGACGTACTGCGTATTATATGTGCTGCTGAAGAAATTTCCT

Network for GWHGAAEX012035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	59	238	9.70E-23
PF00271.30	Helicase_C	288	435	3.00E-07
PF02889.15	Sec63	556	598	2.70E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.220
SRP064423	SRR2545915	Juvenile tuber	4.410
SRP108465	SRR5643513	five period of Gastrodia elata	1.870
	SRR5643514	five period of Gastrodia elata	1.890
	SRR5643515	five period of Gastrodia elata	1.490
	SRR5643524	five period of Gastrodia elata	1.330
	SRR5643525	five period of Gastrodia elata	2.010
	SRR5643528	five period of Gastrodia elata	1.480
	SRR5643658	five period of Gastrodia elata	1.650
	SRR5643659	five period of Gastrodia elata	1.350
	SRR5643660	five period of Gastrodia elata	1.580
	SRR5643661	five period of Gastrodia elata	1.610
	SRR5643662	five period of Gastrodia elata	1.300
	SRR5643663	five period of Gastrodia elata	1.910
	SRR5643664	five period of Gastrodia elata	1.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.470
SRP279888	Gastro	Gastrodia elata tuber	2.76
	Juven	Juvenile tuber	4.23
	Mother_Gastro	Mother tuber of Gastrodia elata	2.59
	Mother_Juven	Mother tuber of Juvenile	5.71