Detail information of GWHGAAEX012036/evm.TU.scaffold_4.412
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-46 | FOG: PPR repeat |
| nr | gi|743851487|ref|XP_010940143.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q3ECH5|PP107_ARATH | 2.00E-133 | Pentatricopeptide repeat-containing protein At1g66345, mitochondrial (Precursor) |
| trEMBL | tr|A0A067KN07|A0A067KN07_JATCU | 1.00E-170 | Uncharacterized protein {ECO:0000313|EMBL:KDP33174.1} |
| TAIR | AT5G59900 | 1.00E-46 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 10345662 | 10347548 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012036
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 216 | 261 | 1.50E-07 |
| PF01535.19 | PPR | 325 | 350 | 0.00043 |
| PF13041.5 | PPR_2 | 353 | 401 | 3.60E-09 |
| PF01535.19 | PPR | 425 | 454 | 0.12 |
| PF01535.19 | PPR | 462 | 490 | 0.058 |
| PF01535.19 | PPR | 497 | 522 | 0.12 |
| PF01535.19 | PPR | 532 | 557 | 0.029 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.650 |
| SRR2545915 | Juvenile tuber | 3.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.390 |
| SRR5643514 | five period of Gastrodia elata | 3.710 | |
| SRR5643515 | five period of Gastrodia elata | 3.380 | |
| SRR5643524 | five period of Gastrodia elata | 4.400 | |
| SRR5643525 | five period of Gastrodia elata | 2.120 | |
| SRR5643528 | five period of Gastrodia elata | 1.250 | |
| SRR5643658 | five period of Gastrodia elata | 1.960 | |
| SRR5643659 | five period of Gastrodia elata | 5.350 | |
| SRR5643660 | five period of Gastrodia elata | 4.460 | |
| SRR5643661 | five period of Gastrodia elata | 4.810 | |
| SRR5643662 | five period of Gastrodia elata | 4.630 | |
| SRR5643663 | five period of Gastrodia elata | 4.850 | |
| SRR5643664 | five period of Gastrodia elata | 3.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.22 |
| Juven | Juvenile tuber | 8.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.72 | |
| Mother_Juven | Mother tuber of Juvenile | 4.35 |