Detail information of GWHGAAEX012038/evm.TU.scaffold_4.415
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384216082|ref|YP_005607248.1| | 2.00E-36 | hypothetical protein BJ6T_23810 [Bradyrhizobium japonicum USDA 6] |
| nr | gi|672130455|ref|XP_008788761.1| | 0 | PREDICTED: reticuline oxidase-like [Phoenix dactylifera] |
| Swissprot | tr|P93479|RETO_PAPSO | 1.00E-124 | Reticuline oxidase (Precursor) |
| trEMBL | tr|I1I1E8|I1I1E8_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G16460.1} |
| TAIR | AT5G44400 | 3.00E-118 | FAD-binding Berberine family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 10387654 | 10389647 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012038
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 79 | 219 | 6.80E-25 |
| PF08031.11 | BBE | 475 | 538 | 4.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.380 |
| SRR2545915 | Juvenile tuber | 8.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.290 |
| SRR5643514 | five period of Gastrodia elata | 11.440 | |
| SRR5643515 | five period of Gastrodia elata | 11.090 | |
| SRR5643524 | five period of Gastrodia elata | 12.010 | |
| SRR5643525 | five period of Gastrodia elata | 50.140 | |
| SRR5643528 | five period of Gastrodia elata | 41.570 | |
| SRR5643658 | five period of Gastrodia elata | 33.210 | |
| SRR5643659 | five period of Gastrodia elata | 8.610 | |
| SRR5643660 | five period of Gastrodia elata | 11.400 | |
| SRR5643661 | five period of Gastrodia elata | 8.750 | |
| SRR5643662 | five period of Gastrodia elata | 11.590 | |
| SRR5643663 | five period of Gastrodia elata | 10.700 | |
| SRR5643664 | five period of Gastrodia elata | 10.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.08 |
| Juven | Juvenile tuber | 2.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.51 | |
| Mother_Juven | Mother tuber of Juvenile | 48.77 |