Gene detail

Detail information of GWHGAAEX012039/evm.TU.scaffold_4.416

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	0	FOG: PPR repeat
nr	gi\|743855016\|ref\|XP_010941187.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Elaeis guineensis]
Swissprot	tr\|Q9LTV8\|PP224_ARATH	0	Pentatricopeptide repeat-containing protein At3g12770
trEMBL	tr\|D7SQP8\|D7SQP8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17979.3}
trEMBL	tr\|D7SQP8\|D7SQP8_VITVI	2.00E-47	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17979.3}
trEMBL	tr\|D7SQP8\|D7SQP8_VITVI	2.00E-31	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17979.3}
trEMBL	tr\|D7SQP8\|D7SQP8_VITVI	2.00E-10	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17979.3}
TAIR	AT3G12770	0	mitochondrial editing factor 22

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	10412660	10417631	+

Transcript Sequence
>GWHTAAEX012039 CAGTTCATATTTTTCAGCCCTCTCAATTTTTTTTCAGATAATATCTACAATAATGTAATTGCAACATTTTTCATTTAAAACTTGAAATATCTTTGTAAACGCCATGATTACCATTCCATCCCTTCGTTTTCACTCCTTTTGTCGCACCTCCACCATCAGAATCAATTTCACTCATTTCCTTCAAGCATCCGGCAAACCCTCAATCTCTAGACTGCAAAAATGTCATTTTTATTGTTCCATTGCTCACCAGTTGCTCGATGAAATCGCCCAACGCGAACTTTCGTACTTCAACAAGACTATTCATCACCTCTCCCTCCAACGCTCCTTCTCTGAGCTGCTCAAAATCTATGTCATCATGCTTCAGAATGGCCACCTCCCAAATAGTTTGACTCTTCCAAGCATCCTCAAAGCATGCACCTCAATCCCAGCTTTCTCCTTCGGTTGCGCCATTCATGTTCATATTATCCGCCTTGGCTTCGAGGCTGCCACCTTCATCCAGAACGGAGTCATTGTCATGTATTCAAGGTTTGCCCGGATTTCAACTGCACGTCAGGTGTTCGAGCTTTTGCCTCATCGGAATATTGTCTCGTGGACCTCGATTATATCAGGCTACGCTCAAAATGGCTTCCCTTTAGAAGCTCTTCATATATTTCAAACAATGAGGCGGGATTCTCTCATCATTCCAGACTTCGTAGCCCTGGTTAGTGTCCTGAAGGCTTATATAGATGTCGGAGACTCTGAGCAGGGAAGAAGCGTTCACAGTTTAGTGGTGAAATTTGGGCTTGAGGGAGAACCCGATTTGCTCATTACTCTCACTGCAATGTATGCCAAATCTGGTCAAGTTCATACTGCAAGGAGTATGTTTGATCAGGTAGATTTTCCAGAGGTCATCCTTTGGAATGCAATGATCTCTGGGTATGCAAAGAATGGCCATGCAGATGAAGCCGTGGAGCTCTTTAAGAAGATGGTTGCAAGGAAGGTTAGACCCGATTCAATCACGCTGCGATCTGCAATTCTGGCTTGTGCCCAAATTGGATCTCTTGAAGCTGCAAAGTGGATTTGGGAGTTTGTTAGTAATAGTGAGTTAAAGGATGACATATTGGTTAACACAGCCATTGTTGACATGTATGCAAAGTGTGGAAGCTTGGTTCATGCTCGTAAAGTGTTTGATGATATTCCTCAAAAAGATGTCGTCTTATGGAGTGCTATGATTATGGGTTACGGATTGTATGGACAGGGAAAGGAAGCAATTTTTCTCTTCCATGAGATGATTCGATCTCGGGTTCGGCCGAATGATGTCACTTTTGTTGGGCTACTTTCAGCTTGCAAGCATGCTGGATTGGTTGGAGAGGGTCGAAATTATTTCTCTTTGATGAGAAAGCATGCAGTTGAACCCCAGCATCGGCATTTTGCTTGCATGGTAGATCTTCTTGCTCGTGCTGGACACCTTAAAGAAGCTTATGAATTTATCAAAAGAATGCCAATGGTGCCAGAGGTATCTGTATGGGGTGCTTTGCTGAATGCATGTAGAATTCACGGTCATGTGGATCTAGGAAATTATGCAGCAGAAAGAATTTTTGCTATAGAACCAGGGAATGCTGGCCATTATGTTCAGCTTTCCAACATATATGCGTCTGCCGGGTTGTGGAAAGATGTAGCAAGGATTCGAGTGTTAATGAGAGAAAGGGGAGTTATTAAGGCCACTGGACTCAGCTCTATTGAAATTAATGGAAAGCTTCAATCATTTTATGCTGGAGACAAGTCTCATCCAAGATCAAAGGAAATATTCGCAACGTTAGATGAATTGGAGAGGAAGCTAAAGAAATATGGATTTTTGCCCCATACAGACTCTGTCTTACATGATCTTGGACCTGAGGAGAAGGAGCTATCATTGTGTAACCACAGTGAAAGGATAGCGATGGCATATGGCATCGTCTGCACTCCTCCTGGTACAACCCTTCGAATTACAAAGAATCTCAGAGTTTGTGTTAACTGTCACTCTGCTACTAAGCTTATTTCAAAGCTTGAGGAACGTGAAATAGTAGTTCGAGATGCAAATCGTTTTCATCTCTTTAAAGATGGTTTCTGTAGCTGTGGTGATTATTGGTGATGGACTAAGGGAAGCCTTTGAAATAAAAGGCTTATCTTCATTATGAAGCTACCAGTTGGGGAACACGATATAATGTATATATATATGGAGTCATTGATCTTCCATTGGGCTAGCACAGAGCATGAGTTTTCCTATCACATATTAAATGGTAGGTAAACAATTTTGGAACTACATTGAATGACTTGTGACGTTAGTGTAGTCTGCCTACCTTTGGTTCTGGTTGGCTGCAGCTTGCTGCAAAACCAAAGAATGTTCAGGTAAGAGCTTGTCTATTGCAGAGTGGGTTCATCTACAGATCTCTTGGAAGTGCATTCTAGATGCATGAGATGATGGTGGATGGCAGTGGTTTCCATCATCAAACATCAATAAAGTGTGGTGGGCAGCAATGAAGGATGGTAAAAATGGTTGGCGTCAGTTGCCGCCCGCCACATGCCACCAATAAGGAGCATGAAAGTAAACTGCAACTAATGATGGCTATTGAGGTTGGGAGGCGGCAATGAGTGGCGGTGATGGCGAATGTCAATTGTCTGTGATGGCTGACGAGTAACAATGGCAAGCATCTATGATGGCGGCAAGGGTTGGTAGAGTGGCAGCAGTGAGGGCAATGTGATAATTTCATAGGATGGAAACTTTAGAAAAATGCTACTTTCAAAACTCTATATAGCAGCTTACTATGTAAAAAATAATTAAGAACAACTTTGTAAATGAGTTTTAAAATTTTGGGATAGTTTTATATAAAGTGTAACCTAACGCAATCCATCCAAATCAGAAGACTAAAGGTCTGACGCCTCAGCACAAGCACCAGATCTATTTACTCAAGAAAATCAAAGGGGGCCTTTTCCACTGCCAAAGGAAGAAAGGAGGAAGAGAGGAGAGTGAGAGAAGAGGCATTGAGTAGCAAAGGAGAGGAAGGAGTGTGACTGTAGGAGCACTTTCCCAAGTTGGAGGCCAACCACTGTTAGAGCTCTAGAAGGAAAGTTTGCAAACAAGAAAAGGGAAGCATTGTACCTTTATTTTATTTTTTTTCTTTTCAAATTCATATATATCAAGATTTATAAATTTATATTTCAACACTCTTGTTTCTTTGCCATGTGTGAGTAATTGAATGTTAGGGTCTATATGTATGAACTAAGTTTATGAGTAGAATGCATGTGAATTAAATGTTCG

Network for GWHGAAEX012039

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	161	189	5.30E-07
PF13041.5	PPR_2	260	308	1.70E-12
PF13041.5	PPR_2	361	408	2.30E-09
PF01535.19	PPR	438	459	0.12
PF14432.5	DYW_deaminase	535	658	9.60E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.780
SRP064423	SRR2545915	Juvenile tuber	0.630
SRP108465	SRR5643513	five period of Gastrodia elata	1.260
	SRR5643514	five period of Gastrodia elata	1.620
	SRR5643515	five period of Gastrodia elata	1.260
	SRR5643524	five period of Gastrodia elata	1.260
	SRR5643525	five period of Gastrodia elata	0.480
	SRR5643528	five period of Gastrodia elata	0.440
	SRR5643658	five period of Gastrodia elata	0.120
	SRR5643659	five period of Gastrodia elata	1.520
	SRR5643660	five period of Gastrodia elata	1.160
	SRR5643661	five period of Gastrodia elata	1.690
	SRR5643662	five period of Gastrodia elata	2.120
	SRR5643663	five period of Gastrodia elata	1.580
	SRR5643664	five period of Gastrodia elata	1.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.600
SRP279888	Gastro	Gastrodia elata tuber	2.63
	Juven	Juvenile tuber	1.02
	Mother_Gastro	Mother tuber of Gastrodia elata	0.62
	Mother_Juven	Mother tuber of Juvenile	0.47