Detail information of GWHGAAEX012046/evm.TU.scaffold_4.426
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|190572660|ref|YP_001970505.1| | 1.00E-94 | ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a] |
| KOG | KOG0331 | 0 | ATP-dependent RNA helicase |
| nr | gi|672184970|ref|XP_008812697.1| | 0 | PREDICTED: ATP-dependent RNA helicase-like protein DB10 [Phoenix dactylifera] |
| Swissprot | tr|Q9LYJ9|RH46_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 46 |
| trEMBL | tr|M5WYA7|M5WYA7_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ18201.1} |
| TAIR | AT3G01540 | 0 | DEAD box RNA helicase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 10827934 | 10855947 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012046
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00397.25 | WW | 27 | 57 | 1.50E-06 |
| PF00270.28 | DEAD | 175 | 345 | 2.80E-48 |
| PF00271.30 | Helicase_C | 382 | 489 | 1.50E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12823 | DDX5, DBP2 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.410 |
| SRR2545915 | Juvenile tuber | 5.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.190 |
| SRR5643514 | five period of Gastrodia elata | 3.140 | |
| SRR5643515 | five period of Gastrodia elata | 2.580 | |
| SRR5643524 | five period of Gastrodia elata | 2.880 | |
| SRR5643525 | five period of Gastrodia elata | 2.380 | |
| SRR5643528 | five period of Gastrodia elata | 1.410 | |
| SRR5643658 | five period of Gastrodia elata | 2.440 | |
| SRR5643659 | five period of Gastrodia elata | 3.380 | |
| SRR5643660 | five period of Gastrodia elata | 2.940 | |
| SRR5643661 | five period of Gastrodia elata | 3.670 | |
| SRR5643662 | five period of Gastrodia elata | 2.530 | |
| SRR5643663 | five period of Gastrodia elata | 3.320 | |
| SRR5643664 | five period of Gastrodia elata | 2.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.49 |
| Juven | Juvenile tuber | 5.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.93 | |
| Mother_Juven | Mother tuber of Juvenile | 5.07 |