Detail information of GWHGAAEX012057/evm.TU.scaffold_4.446
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389876722|ref|YP_006370287.1| | 2.00E-29 | putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065] |
| KOG | KOG0143 | 3.00E-123 | Iron/ascorbate family oxidoreductases |
| nr | gi|672120170|ref|XP_008783342.1| | 3.58E-143 | PREDICTED: gibberellin 20 oxidase 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q0JH50|GAOX2_ORYSJ | 7.00E-129 | Gibberellin 20 oxidase 2 |
| trEMBL | tr|M0SPF2|M0SPF2_MUSAM | 2.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P16380_001} |
| TAIR | AT4G25420 | 3.00E-123 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 12282626 | 12286484 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012057
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 37 | 134 | 8.40E-16 |
| PF03171.19 | 2OG-FeII_Oxy | 197 | 296 | 7.10E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.840 |
| SRR2545915 | Juvenile tuber | 23.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.460 |
| SRR5643514 | five period of Gastrodia elata | 3.930 | |
| SRR5643515 | five period of Gastrodia elata | 6.330 | |
| SRR5643524 | five period of Gastrodia elata | 3.710 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.420 | |
| SRR5643658 | five period of Gastrodia elata | 0.480 | |
| SRR5643659 | five period of Gastrodia elata | 10.120 | |
| SRR5643660 | five period of Gastrodia elata | 13.460 | |
| SRR5643661 | five period of Gastrodia elata | 12.300 | |
| SRR5643662 | five period of Gastrodia elata | 25.450 | |
| SRR5643663 | five period of Gastrodia elata | 11.400 | |
| SRR5643664 | five period of Gastrodia elata | 29.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.90 |
| Juven | Juvenile tuber | 3.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.10 | |
| Mother_Juven | Mother tuber of Juvenile | 2.00 |