Gene detail

Detail information of GWHGAAEX012058/evm.TU.scaffold_4.451

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|92116635\|ref\|YP_576364.1\|	1.00E-16	hypothetical protein Nham_1056 [Nitrobacter hamburgensis X14]
KOG	KOG4159	6.00E-172	Predicted E3 ubiquitin ligase
nr	gi\|743822518\|ref\|XP_010932298.1\|	0	PREDICTED: UPF0392 protein Os08g0121900 [Elaeis guineensis]
Swissprot	tr\|Q6YRM6\|Y8219_ORYSJ	0	UPF0392 protein Os08g0121900
trEMBL	tr\|M0TVF7\|M0TVF7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P32050_001}
TAIR	AT3G27330	6.00E-172	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	12728133	12730674	-

Transcript Sequence
>GWHTAAEX012058 CTGAAATTTAGAAATAAGTATATATATAAATAAAATATAATAAAAAATAAACAAAAATTTAAGACCAGCGACTTTTTTTGAGCGAGCGGCGACCTTCGTTGAACGGGCAAATGAGTCGCATCGCCGTCACTGTTTTTGGTTCTCGCAAGCGGCGATCGTATCTACAATTTCTTTCTTAGAATCTCTCCCATTCTTTTTCCAGCTTCGAATCTGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATGAGCACATTCTTAACCGGAAAAGCAGAAAGAGCTCGGATCACGGGAGAAGCTCCAATCTGGATCTGGTGCTCTTCAGCAGAGAAAGATGAGAGGCCGGCAGTTTGATGCCTCCATCAAAGATCGCCGCCATGGCGCAGCCGGGAAATTTTCGAGGCAATCGAGCTATTGCGCCTTTATCCTTTTCCTAGGCTGCTTCGCCCTCTTCGCCGCCCTTGCACTTTCCAGCTTCCGACTTTTTGGCGTTGCTTTCCGACCCGTCATTGTGCTTCCAACATGGAGGAATCCTGTTATGAGAGCCGTCTCCGATCAACGAAACTCTCTTTCCCGGCGAGATCTACGATTTTCTAATTCATCCTCTGCTCATCTGCAGATCGAGCAGGCCGTTTCTTTACCCGACCAAGTTCTCCTTTTCCTGAAACCCCGAACCCTAATACCAATTCCCCCTCTTGCAGATCTGAACTGCTTCTACCTCTTCCCCGAATCCATGGAGTCTCATCTCAGCCTCCCTGCCCTTTCCTTCTCCACTGCTGGCTCTTTCATTCGCTGCCCTCGCCCTCCATCAGATCACCTGTCCTTCAACATCTCCCTTTCCCTCTCCTCATCGCTTCCCCCAATCCTCCCCCTCCCATCAGACCGCCTAGCCTATGCTTCCATATTAGACGACATGGATAACTCCACCATCATCTTCGCCAAGGGCCACAACCTTCGCCCTGCTCGCCTCTCTAACCCTAACAGCTTCGAGTGCATCTTCGGCTGGGACTTCTCCCGCCCCAAATACCATCTCACATCAGATGTCCTATCTGCCGCCCAAGAGATTTTTCGCTGCCGCACCCCTCTCAGCATCCTCCATCGCCGCCGCCTCCTCCCTTCCTCCAACTCGCCGCTGGTTTCCGTCCGCTTCAAAGCCCATGGCAGTGTCCCTCTCCCCTCCATTGCTCGGCCCGAACCCCTCGTCCCTCCATCAAAGCCCCACCTCATGTGCGTTTGCACCATGCTCCGAAACCAGGCTAGGTTTCTCCGGGAGTGGGTCGTCTACCACTCCCGCATCGGCGTCGAGCGCTGGTTCATATACGATAACAACAGCGACGACGACATCGTCCAAATCGTGGAACGCCTTTCCTCCGATCTCAGCGCCGTGATTAGCCTCCACGAGTGGCCGTGGGCAAAAACACAGGAGGCCGGATTCGCTCACTGCGCCGTGCGCGCCCGCGAGTCCTGCAAATGGGTCGGATTCATTGACGTGGACGAGTTCCTCTACTTCCCGACAAACGCTGGGCTGCATGATCTGCTGAAGAACTACTCTAGAACGCCCAGGGTTGCGGAGCTCCGCGCCGCCTGCCATAGCTTCGGGCCTTCGGGGAGGAAGACGGCTCCCCCGGAAGGTGTCATGGCCGGGTATACATGCCGCATTTCTCCGCCGGAGAGGCACAAATCCATCGTCAGGCCGGACGCGCTGAACCCCTCCCTCGTCAACATCGTTCACCATTTTCATCTCAGGGATGGAATGAAGTACGTCAATGTGGATGCGCGGAAAATGGTCATCAACCATTACAAATATCAAGTGTGGGAGGTGTTCAAGGAGAAGTTCCACAGGCGGGTTGCGACCTACGTTGCGGATTGGAAGGATGACGAGAATAAGGGATCGAAGGACAGGGCGCCGGGATTGGGGACCAGGGCTGTCGAACCGTCAGATTGGGCCAGCCGATTCTGCGAGGTGAAGGACACCGGTTTACGGGATTGGGTGCTGCGGGCTTTTGCCGATCCGAGCAGTGGCCGCCTTCCGTGGTAGTGGATGAATGGCTTGTTGAACTTCTTCTATGGAAGCATGTAGAGCTGCATTATGATACAGGTGCAATAAAGAGTAACATCATTGTTTTCTTATAAATAATTCTTGTAATTAGGGAGACTGTGAGGAAAATTGATTCTTTTTTGTAGATAGGAACATACTGTGTAGCCATCTTTACAGTGATATTTAGATGGCAGTATGAATTGAGTGTGAATTTTGATTAGGGATTGATTTTTATTCAAGTTAATATAATGTTTACTTTAAACGATGTATAGGATTATTATTGATGAATTGTTCTGCTTGAATTTATATGACTATTAAGCCACCTGCTTTGCCAA

Network for GWHGAAEX012058

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01697.26	Glyco_transf_92	294	506	1.20E-38

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.120
SRP064423	SRR2545915	Juvenile tuber	9.100
SRP108465	SRR5643513	five period of Gastrodia elata	11.860
	SRR5643514	five period of Gastrodia elata	11.600
	SRR5643515	five period of Gastrodia elata	22.230
	SRR5643524	five period of Gastrodia elata	24.810
	SRR5643525	five period of Gastrodia elata	35.970
	SRR5643528	five period of Gastrodia elata	44.530
	SRR5643658	five period of Gastrodia elata	31.470
	SRR5643659	five period of Gastrodia elata	36.060
	SRR5643660	five period of Gastrodia elata	22.740
	SRR5643661	five period of Gastrodia elata	33.350
	SRR5643662	five period of Gastrodia elata	40.010
	SRR5643663	five period of Gastrodia elata	31.230
	SRR5643664	five period of Gastrodia elata	33.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.260
SRP279888	Gastro	Gastrodia elata tuber	20.60
	Juven	Juvenile tuber	4.90
	Mother_Gastro	Mother tuber of Gastrodia elata	41.80
	Mother_Juven	Mother tuber of Juvenile	33.44