Gene detail

Detail information of GWHGAAEX012060/evm.TU.scaffold_4.453

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743886606\|ref\|XP_010910180.1\|	1.56E-144	PREDICTED: uncharacterized protein LOC105036137 [Elaeis guineensis]
trEMBL	tr\|M0S3M9\|M0S3M9_MUSAM	7.00E-139	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P27720_001}
trEMBL	tr\|M0S3M9\|M0S3M9_MUSAM	3.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P27720_001}
TAIR	AT1G70630	4.00E-117	Nucleotide-diphospho-sugar transferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000011	12776076	12795181	-

Transcript Sequence
>GWHTAAEX012060 ATGATAGCAAGATCCCAAAATTATTCTTCTGCAATTTCTGTTGTTATTGATCCTGAAACAATTCTTCTACCCAACTTCCTCGCTGCTTTACATTGTGCTTACAAACTTGATCGTGACTGGTTTCTATTTTCAATGACACCAAGCATCTCAAACTTTCCTTTTCACATAGATGATACTGGGAAGTACTGGTTTAAAGAAGATGGTACACATATAGGTATTCAGAAGCTGCAGGAATATGTTATCAAGGAACTGCAATGGAGAAACTGTGGTGATAAGCTTCTAATGGCTTGGAACACTGGTGAGGTACCACTACATGCCGGGATTCTCCCTCCTTTCTTATATGGGAAAGGTTTCCACAATTTGTGGCTTTTACATGAGGTGTTGTCATCAGAATTCAGATTGGCTATTGATAGCAGTTATATAGCATCTGCAATATATCTGGAGAATCCGGCCTATCATTTTAAGAGGAATATCGCACCTGATGCTGGCAACGGTGGTTGGGAAGTGGCAGGGAATCGTCATCTTGCAGCTTTATATGGATCTTTTTCTTCTGGGCAACAAAACTCACTAACCACCGCTCTTAAGTATATAAAATGTTCTGGAAAACATTTTCTTGTTGATTCACTGAAAAAGGTTGTTTTCTCCAATGAAGAAGCAAACACTTATCCTTTTGACCGTGAGAGCAGATTGGTCATCTTCTTTAGAATGCTATTGCACTTGCCTTTTGGGCTAAACTTAGGTCGGTGCATTGTGGATATAAATCTCCTTGAACACCAATGTTCCCTTAAGAAAATATACAAGAAGGCTTCTACAAAACCTTTAGCATTGTCTTATCAATTTGATTTGGAATCCCTTCTTCATATCACAGCTGATAAGCATAAAACAATTGTTCTTGCAATTGCTGGAGAAAATTACAGGGACATGCTTATGAGTTGGGTTTGCCGTCTGCGCTACTTATCTGTATCCAATTTTATCGTCTGTGCTCTTGATACTGAAACTTATCAGTTTGCATTATTGATGGGTTTGCCAGTTTTCAAGGATCGACATCCACCAAGCAATATTAGCTTCAACGACTGCCACTTTGGCACCAACTGTTTCCAGAGAGTGACAAAAGTCAAGTCCCGGATAGTTTTGCAGATACTGAAATTGGGATACAGTGTTCTCCTAAGTGATGTTGACATCTATTGGTTTAACAATCCTTTGACTTATCTCCAATCATTTGATCCTGCTATTTTGGTGGCACAAACAGATGAATATAATGAGACAGTCATTGGCCTGCTTTGCCTTCAGAACGCGGATGAAGATGTAGGCCACGAAGTTAACCAAGCTGTAAGTAATTACGGCGCTCTCGCCACCGCGCAACCATATTTCCAGGTTGCTGAAGCGCCGGTTCATCAGAGGAATACTGCAGTGACGACCAAATCTTGCTTTGGCTTTCTCTGGCTGCACTCGCAGGCTGACTGGCGCGGGCTAGCGGCTCAGTTGGTCCGGGTTAGTTCTGGTGGGCCGGGCCAGTTTTGGTGGGCTTTGCCGGTTTGGGTTTCGCGGATTGGAAACAACGGGCTGAAGGTTCATGAACGGCTGCGACACGAGTCGTGTCAATTTGGCGTACGACGACAGGTCATTCCTCTCTCCCTCCTTCACTCCTCTCCCTCTCTACGGGCTAGGCAGTGCATCCTTGCCTCTCCACAAATCTACATCTCTGTTCTTTACTCCCCATATATTGTCTTCGCCACCCACTTCAAATCTTTCAATTTCCATGTTGGTAACAACTTGTCTCTCCTTACAATTAAAATAGATACCCAGCTGTTGATCTATATTGCAGGACCTATAAACTTTCCTCGGAGATTGAATTCTGGCTTTTACTTTGCTCGCTCTGATCCGCCGACGATTGCCGCAATGGAAAAGGTTGTCAGGCACGCATCAGCCTCTGCCCTGTCGGAGCAACCCAGCTTCTACGATGTCCTGTGCGGGGAGGGCGGCACAAACCGCATCGACAGTGCCCATTGCTTTGAGCCGGGTACGAACCTGACCGTGCACTTCCTTGACCGGAACCTGTTTCCCAACGGTGCTTACAGGGGACTGTGGGGGAGAAACAGTGTGAGGTCTGTCTGCCGGAGGCAGGGCTGCCTCATCCTTCATAACAACTGGATCAGCGGAAGGCTGAGAAAATTGGAGCGCCAAGTGCGCTCCGGCTTGTGGGAATACGACCCTGCTTTCAGAATGTGCTTCCAAAGCTGGCACCGCACCAATCTGACCAGCCATTTTTTCTAA

Network for GWHGAAEX012060

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03407.15	Nucleotid_trans	321	422	8.50E-25
PF03407.15	Nucleotid_trans	612	727	1.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT77

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.130
SRP064423	SRR2545915	Juvenile tuber	3.370
SRP108465	SRR5643513	five period of Gastrodia elata	2.900
	SRR5643514	five period of Gastrodia elata	3.050
	SRR5643515	five period of Gastrodia elata	3.250
	SRR5643524	five period of Gastrodia elata	2.670
	SRR5643525	five period of Gastrodia elata	4.890
	SRR5643528	five period of Gastrodia elata	3.750
	SRR5643658	five period of Gastrodia elata	5.080
	SRR5643659	five period of Gastrodia elata	3.410
	SRR5643660	five period of Gastrodia elata	3.010
	SRR5643661	five period of Gastrodia elata	2.880
	SRR5643662	five period of Gastrodia elata	3.790
	SRR5643663	five period of Gastrodia elata	4.420
	SRR5643664	five period of Gastrodia elata	3.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.410
SRP279888	Gastro	Gastrodia elata tuber	4.95
	Juven	Juvenile tuber	5.41
	Mother_Gastro	Mother tuber of Gastrodia elata	4.53
	Mother_Juven	Mother tuber of Juvenile	5.85