Detail information of GWHGAAEX012066/evm.TU.scaffold_4.460
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-115 | FOG: PPR repeat |
| nr | gi|672112230|ref|XP_008804688.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|O81028|PP171_ARATH | 3.00E-116 | Pentatricopeptide repeat-containing protein At2g26790, mitochondrial (Precursor) |
| trEMBL | tr|M0RVU2|M0RVU2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P00340_001} |
| trEMBL | tr|M0RVU2|M0RVU2_MUSAM | 1.00E-45 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P00340_001} |
| TAIR | AT2G26790 | 1.00E-115 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 13123377 | 13134533 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012066
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 229 | 278 | 1.80E-11 |
| PF13041.5 | PPR_2 | 299 | 345 | 4.50E-13 |
| PF12854.6 | PPR_1 | 399 | 430 | 1.10E-06 |
| PF13041.5 | PPR_2 | 437 | 485 | 3.10E-11 |
| PF12854.6 | PPR_1 | 504 | 535 | 1.50E-09 |
| PF13041.5 | PPR_2 | 545 | 592 | 1.30E-07 |
| PF01535.19 | PPR | 618 | 645 | 0.0079 |
| PF13041.5 | PPR_2 | 648 | 695 | 2.90E-13 |
| PF13041.5 | PPR_2 | 739 | 786 | 2.00E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.530 |
| SRR2545915 | Juvenile tuber | 47.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.290 |
| SRR5643514 | five period of Gastrodia elata | 7.620 | |
| SRR5643515 | five period of Gastrodia elata | 7.050 | |
| SRR5643524 | five period of Gastrodia elata | 6.270 | |
| SRR5643525 | five period of Gastrodia elata | 8.110 | |
| SRR5643528 | five period of Gastrodia elata | 5.310 | |
| SRR5643658 | five period of Gastrodia elata | 7.870 | |
| SRR5643659 | five period of Gastrodia elata | 16.960 | |
| SRR5643660 | five period of Gastrodia elata | 19.310 | |
| SRR5643661 | five period of Gastrodia elata | 14.280 | |
| SRR5643662 | five period of Gastrodia elata | 19.970 | |
| SRR5643663 | five period of Gastrodia elata | 18.330 | |
| SRR5643664 | five period of Gastrodia elata | 21.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.92 |
| Juven | Juvenile tuber | 29.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.74 | |
| Mother_Juven | Mother tuber of Juvenile | 15.53 |