Detail information of GWHGAAEX012069/evm.TU.scaffold_4.467
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-165 | FOG: PPR repeat |
| nr | gi|743859885|ref|XP_010942864.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Elaeis guineensis] |
| Swissprot | tr|Q9LSL9|PP445_ARATH | 2.00E-165 | Pentatricopeptide repeat-containing protein At5g65560 |
| trEMBL | tr|K3XV21|K3XV21_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si005778m} |
| trEMBL | tr|K3XV21|K3XV21_SETIT | 1.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si005778m} |
| TAIR | AT5G65560 | 8.00E-165 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000011 | 13483657 | 13487462 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012069
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 125 | 150 | 2.40E-08 |
| PF12854.6 | PPR_1 | 160 | 187 | 5.70E-06 |
| PF13041.5 | PPR_2 | 199 | 247 | 1.80E-16 |
| PF13041.5 | PPR_2 | 269 | 317 | 8.00E-09 |
| PF13041.5 | PPR_2 | 338 | 388 | 2.30E-16 |
| PF13041.5 | PPR_2 | 409 | 458 | 2.90E-12 |
| PF01535.19 | PPR | 482 | 511 | 0.0001 |
| PF13041.5 | PPR_2 | 514 | 561 | 4.70E-18 |
| PF01535.19 | PPR | 588 | 617 | 0.0065 |
| PF13041.5 | PPR_2 | 619 | 664 | 5.60E-10 |
| PF13041.5 | PPR_2 | 705 | 752 | 7.20E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.490 |
| SRR2545915 | Juvenile tuber | 7.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.640 |
| SRR5643514 | five period of Gastrodia elata | 5.560 | |
| SRR5643515 | five period of Gastrodia elata | 5.580 | |
| SRR5643524 | five period of Gastrodia elata | 6.750 | |
| SRR5643525 | five period of Gastrodia elata | 4.960 | |
| SRR5643528 | five period of Gastrodia elata | 4.200 | |
| SRR5643658 | five period of Gastrodia elata | 3.860 | |
| SRR5643659 | five period of Gastrodia elata | 6.390 | |
| SRR5643660 | five period of Gastrodia elata | 7.570 | |
| SRR5643661 | five period of Gastrodia elata | 5.920 | |
| SRR5643662 | five period of Gastrodia elata | 7.430 | |
| SRR5643663 | five period of Gastrodia elata | 6.860 | |
| SRR5643664 | five period of Gastrodia elata | 4.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.59 |
| Juven | Juvenile tuber | 6.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.22 | |
| Mother_Juven | Mother tuber of Juvenile | 4.11 |