Detail information of GWHGAAEX012072/evm.TU.scaffold_40.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16881.00E-97Golgi proteins involved in ER retention (RER)
nrgi|743851289|ref|XP_010940096.1|1.14E-111PREDICTED: protein RER1B-like [Elaeis guineensis]
Swissprottr|O48671|RER1B_ARATH3.00E-98Protein RER1B
trEMBLtr|E0CQE9|E0CQE9_VITVI1.00E-109Putative uncharacterized protein {ECO:0000313|EMBL:CBI19718.3}
TAIRAT2G216001.00E-97endoplasmatic reticulum retrieval protein 1B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000038120182151752-
Transcript Sequence

Network for GWHGAAEX012072

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03248.12Rer1181802.80E-72
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.820
SRR2545915Juvenile tuber15.850
SRP108465SRR5643513five period of Gastrodia elata21.980
SRR5643514five period of Gastrodia elata22.480
SRR5643515five period of Gastrodia elata22.860
SRR5643524five period of Gastrodia elata24.930
SRR5643525five period of Gastrodia elata23.390
SRR5643528five period of Gastrodia elata28.140
SRR5643658five period of Gastrodia elata27.390
SRR5643659five period of Gastrodia elata20.710
SRR5643660five period of Gastrodia elata21.430
SRR5643661five period of Gastrodia elata19.980
SRR5643662five period of Gastrodia elata18.230
SRR5643663five period of Gastrodia elata20.930
SRR5643664five period of Gastrodia elata14.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.340
SRR6049655Rhizomagastrodiae_C368-T10_good_139.510
SRR6049656Rhizomagastrodiae_C368-T07_good_119.760
SRR6049657Rhizomagastrodiae_C368-T07_good_114.100
SRR6049658Rhizomagastrodiae_C368-T04_good_114.150
SRR6049659Rhizomagastrodiae_C368-T04_good_110.270
SRR6049660Rhizomagastrodiae_C368-T01_good_113.980
SRR6049661Rhizomagastrodiae_C368-T04_good_114.270
SRR6049662Rhizomagastrodiae_C368-T01_good_124.950
SRR6049663Rhizomagastrodiae_C368-T01_good_119.930
SRR6049664Rhizomagastrodiae_C368-T10_good_129.190
SRR6049665Rhizomagastrodiae_C368-T10_good_129.190
SRP279888GastroGastrodia elata tuber 14.64
JuvenJuvenile tuber15.92
Mother_GastroMother tuber of Gastrodia elata 31.23
Mother_JuvenMother tuber of Juvenile 19.40