Detail information of GWHGAAEX012075/evm.TU.scaffold_40.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|116625362|ref|YP_827518.1|4.00E-51DNA-3-methyladenine glycosylase II [Candidatus Solibacter usitatus Ellin6076]
KOGKOG19189.00E-943-methyladenine DNA glycosidase
nrgi|672181049|ref|XP_008810730.1|2.88E-104PREDICTED: probable DNA-3-methyladenine glycosylase 2 isoform X2 [Phoenix dactylifera]
trEMBLtr|A0A067KTA6|A0A067KTA6_JATCU7.00E-97Uncharacterized protein {ECO:0000313|EMBL:KDP39456.1}
TAIRAT3G508809.00E-94DNA glycosylase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000038660887665343-
Transcript Sequence

Network for GWHGAAEX012075

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00730.24HhH-GPD892333.90E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01247alkA Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0006284Biological Processbase-excision repair
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.420
SRR2545915Juvenile tuber6.250
SRP108465SRR5643513five period of Gastrodia elata12.420
SRR5643514five period of Gastrodia elata9.470
SRR5643515five period of Gastrodia elata13.060
SRR5643524five period of Gastrodia elata10.900
SRR5643525five period of Gastrodia elata14.110
SRR5643528five period of Gastrodia elata40.400
SRR5643658five period of Gastrodia elata21.040
SRR5643659five period of Gastrodia elata19.850
SRR5643660five period of Gastrodia elata22.120
SRR5643661five period of Gastrodia elata24.830
SRR5643662five period of Gastrodia elata23.230
SRR5643663five period of Gastrodia elata21.210
SRR5643664five period of Gastrodia elata26.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.700
SRR6049655Rhizomagastrodiae_C368-T10_good_126.710
SRR6049656Rhizomagastrodiae_C368-T07_good_118.080
SRR6049657Rhizomagastrodiae_C368-T07_good_113.430
SRR6049658Rhizomagastrodiae_C368-T04_good_115.420
SRR6049659Rhizomagastrodiae_C368-T04_good_113.920
SRR6049660Rhizomagastrodiae_C368-T01_good_113.780
SRR6049661Rhizomagastrodiae_C368-T04_good_115.560
SRR6049662Rhizomagastrodiae_C368-T01_good_122.770
SRR6049663Rhizomagastrodiae_C368-T01_good_115.380
SRR6049664Rhizomagastrodiae_C368-T10_good_120.740
SRR6049665Rhizomagastrodiae_C368-T10_good_120.740
SRP279888GastroGastrodia elata tuber 19.84
JuvenJuvenile tuber10.09
Mother_GastroMother tuber of Gastrodia elata 25.60
Mother_JuvenMother tuber of Juvenile 8.78