Detail information of GWHGAAEX012078/evm.TU.scaffold_40.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|397779870|ref|YP_006544343.1| | 7.00E-76 | D-xylose-proton symporter [Methanoculleus bourgensis MS2] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|695025629|ref|XP_009400073.1| | 0 | PREDICTED: sugar transporter ERD6-like 4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FRL3|ERDL6_ARATH | 0 | Sugar transporter ERD6-like 6 |
| trEMBL | tr|M0SWY9|M0SWY9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P09100_001} |
| TAIR | AT1G75220 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 847760 | 889684 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012078
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 60 | 496 | 2.00E-94 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 99.620 |
| SRR2545915 | Juvenile tuber | 75.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.090 |
| SRR5643514 | five period of Gastrodia elata | 51.220 | |
| SRR5643515 | five period of Gastrodia elata | 51.390 | |
| SRR5643524 | five period of Gastrodia elata | 46.400 | |
| SRR5643525 | five period of Gastrodia elata | 74.570 | |
| SRR5643528 | five period of Gastrodia elata | 68.900 | |
| SRR5643658 | five period of Gastrodia elata | 89.350 | |
| SRR5643659 | five period of Gastrodia elata | 60.600 | |
| SRR5643660 | five period of Gastrodia elata | 65.520 | |
| SRR5643661 | five period of Gastrodia elata | 60.160 | |
| SRR5643662 | five period of Gastrodia elata | 62.270 | |
| SRR5643663 | five period of Gastrodia elata | 64.930 | |
| SRR5643664 | five period of Gastrodia elata | 70.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 87.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 75.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 77.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 104.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 113.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 130.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 98.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 104.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 68.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 74.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 61.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 61.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 69.16 |
| Juven | Juvenile tuber | 82.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 92.79 | |
| Mother_Juven | Mother tuber of Juvenile | 63.09 |