Detail information of GWHGAAEX012080/evm.TU.scaffold_40.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|284005877|ref|YP_003391696.1|3.00E-30glycoside hydrolase family 28 [Spirosoma linguale DSM 74]
nrgi|157165824|gb|ABV25001.1|0polygalacturonase 4 [Oncidium hybrid cultivar]
Swissprottr|Q949Z1|PGLR4_ARATH1.00E-110Polygalacturonase At1g48100 (Precursor)
trEMBLtr|A8D0U3|A8D0U3_ONCHC0Polygalacturonase 4 {ECO:0000313|EMBL:ABV25001.1}
TAIRAT1G605901.00E-177Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000038991413994041+
Transcript Sequence

Network for GWHGAAEX012080

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00295.16Glyco_hydro_28223308.30E-82
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH28
Carbohydrate-Active enzymes FamilyGH28

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.780
SRR2545915Juvenile tuber1.320
SRP108465SRR5643513five period of Gastrodia elata1.310
SRR5643514five period of Gastrodia elata2.010
SRR5643515five period of Gastrodia elata1.650
SRR5643524five period of Gastrodia elata1.840
SRR5643525five period of Gastrodia elata3.690
SRR5643528five period of Gastrodia elata2.170
SRR5643658five period of Gastrodia elata2.980
SRR5643659five period of Gastrodia elata2.820
SRR5643660five period of Gastrodia elata1.920
SRR5643661five period of Gastrodia elata1.180
SRR5643662five period of Gastrodia elata1.580
SRR5643663five period of Gastrodia elata1.670
SRR5643664five period of Gastrodia elata1.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.840
SRR6049655Rhizomagastrodiae_C368-T10_good_12.410
SRR6049656Rhizomagastrodiae_C368-T07_good_13.080
SRR6049657Rhizomagastrodiae_C368-T07_good_13.580
SRR6049658Rhizomagastrodiae_C368-T04_good_13.540
SRR6049659Rhizomagastrodiae_C368-T04_good_14.480
SRR6049660Rhizomagastrodiae_C368-T01_good_13.140
SRR6049661Rhizomagastrodiae_C368-T04_good_15.060
SRR6049662Rhizomagastrodiae_C368-T01_good_13.420
SRR6049663Rhizomagastrodiae_C368-T01_good_12.440
SRR6049664Rhizomagastrodiae_C368-T10_good_11.890
SRR6049665Rhizomagastrodiae_C368-T10_good_11.890
SRP279888GastroGastrodia elata tuber 2.19
JuvenJuvenile tuber3.71
Mother_GastroMother tuber of Gastrodia elata 1.54
Mother_JuvenMother tuber of Juvenile 1.69