Detail information of GWHGAAEX012087/evm.TU.scaffold_40.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332662911|ref|YP_004445699.1| | 7.00E-39 | Naringenin-chalcone synthase [Haliscomenobacter hydrossis DSM 1100] |
| nr | gi|681884021|gb|AIM58716.1| | 4.18E-174 | bibenzyl synthase [Cymbidium hybrid cultivar] |
| Swissprot | tr|P53416|BBS_PHASS | 1.00E-171 | Bibenzyl synthase |
| trEMBL | tr|A0A088G5Z5|A0A088G5Z5_9ASPA | 2.00E-174 | Bibenzyl synthase {ECO:0000313|EMBL:AIM58716.1} |
| TAIR | AT5G13930 | 5.00E-133 | Chalcone and stilbene synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 1798510 | 1799424 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012087
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00195.18 | Chal_sti_synt_N | 2 | 142 | 1.10E-58 |
| PF02797.14 | Chal_sti_synt_C | 155 | 303 | 1.20E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00660 | CHS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Flavonoid biosynthesis | map00941 | ||
| Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.040 |
| SRR2545915 | Juvenile tuber | 0.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.100 |
| SRR5643514 | five period of Gastrodia elata | 0.080 | |
| SRR5643515 | five period of Gastrodia elata | 0.380 | |
| SRR5643524 | five period of Gastrodia elata | 0.250 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.090 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 59.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 90.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 140.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 166.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 107.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 178.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 35.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.81 |
| Juven | Juvenile tuber | 9.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.04 | |
| Mother_Juven | Mother tuber of Juvenile | 1.00 |