Gene detail

Detail information of GWHGAAEX012090/evm.TU.scaffold_40.32

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672118395\|ref\|XP_008782406.1\|	2.85E-18	PREDICTED: putative nuclear matrix constituent protein 1-like protein [Phoenix dactylifera]
Swissprot	tr\|Q9FLH0\|NMCP_ARATH	2.00E-08	Putative nuclear matrix constituent protein 1-like protein
trEMBL	tr\|M0T5I3\|M0T5I3_MUSAM	2.00E-17	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P09340_001}
TAIR	AT1G68790	5.00E-15	little nuclei3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000038	1982964	2017905	+

Transcript Sequence
>GWHTAAEX012090 GCTTTCGGCAGCACCAGGCTATGTTGCATATAGATCGGAACGGCTGGTTTTTCGCAATTTTCTCGCCTCCTTTCATTTTAGACGCCAAGTTCTCTTGTGCGTTTCTCCATTCCCTTATCCTAACCACCATGACAGGGCTTTTAGCAAGCGCAGCGTTTTTTGATCTCGTCGTATCCACAGAAGATAATGTGGCCCAAGCTCTCCTTTCTGCCAAAGGGCTTTGGCCGATTGAGGAATGGTCGAACTTCTTCGGTATTTACAAGAACAACTCCCAGAAATATGATTACCCGAGATGAAGATGGGCATGAATCTCATGTCGAAGAAGATCCACCTAAGCATCATTTGATTGGGGAGTCAATCAGCTTCTTTGAATGTGGAGGCACTGACGAGGCAAAGGAGGGAAATAATTTTTGCAGCGAAGAATTGTCTGAAGATGTAGGATTCGAAAGAAATGAGAAGGATGCGCTTGCCAAGAGGATTGGGGAGCTCGAAAAGGAGCTTTATGATTACCAATACCATATGGGTCTTCTCCTTATTGAGAGGAAGATGCTAACTTCTGAATTTGAAGAGCTCAGGCAAGGAATGTCTAAAGCCCTGGAAAACTTGAAAATAGAGCGTGAAACATTCTCCAGCACTCTATCTAAAAAAGAAAGGCAGGAGCATAGTATTCTGATTGCTTTGGAAGCCGAGAGGCAGCATGTTTCAGATCTTGAAAGGAATATTGACAAAATGCAAACAGAAGGGAAATGTCTTATTGAACAAAAGGAAACTCACCAAAGTTGTGAACCAGGGCTGCTGGAACCTCAGTTGGAGCTTAAGAAATTACAAAATTTTCTTGATAAAAGGAAGATGGAATTAGCAAACTTGAAACATGGATTTAGTGAAATAAAGGAGGGAGTTGAAGAGATCCAGACTAGTTTTGTCAAGCTGAATAATGTGTCTAACTTCAGGCTGGGTAGTAGTAGTAATATACAACTAACTTCAGCTAGTAAAGAGAAGGAAGTTGATTATATGAATGCGAAGCCAGAGAAGAAAGAGAGAGATCTACTTGCTACTCAAGGGAAACATGTTACTGGAGAAAGTGCTCTGCTGTCTAAGAAACAAGCCTTTGACCAGAATTTGGATGATGGAAAGAGATCACTAGACCATAAAATGTATGAACTTTATAATTTGAGGAAGCGAAGTACTGCAGAGAGTGGATATGGAATCCAGATTACAGATGATATGTTGGCTCAGAAAAAGGAAATTGAAGTAGCTAAAGTTAAAATCGAGAAGGACAAGGAAACTCTCAACAAATTGTATTTTGGACTTAAGAAGTTTAAACAAGAACTTATCAAGAAGAGGGACCTCTTACTTTCTCTACCTGTGCACTACAAGGCCTGCATAAATTGTAGTCTTTTATATAATGAAATAGACTTTGCCAGTCTTGAAACATTAGGAGGAACTGAACTTGCAAGTGATATCCTATCACTGAGTATTCTTGATGAGCATATGAATAATCAAAATAATGACTCTTTTCCTCAGAAGGAATATCAGCCCGTTAAAACTAATGGTTGCATGCTGCGCCTTCAACAATGCTCTGAATTATGCAATTTTAATGCAAGTGGAGGTGATCTAAATTCTGCTGATGATAATGAAAGAAAAGCTACAGATGTTGAAACTAGGTCTAAACTCATACTGGGGATTTCTCAAGATAAATTAGATAATAATAAGAGAATAAAACCTGGCCATGGAGCTAGAAAAATTGAAATCATTAAGAGATTTCCAAAACATATACGATCATTGGAACAACACTCAGACATAGTGGATAATGCATTAACGTTTGAATGTCAGCCCAATGCTTGTTCCAGCTGTGAACAAATTGAGAGTCCTACTCTGCCTTCTAAATCTAAGAGGGGTCAACCTAGGCCTAACAAAAGAACAGGTTCTATGAAAGCAGTCATCAGGAATGCTGAAGAAAAACTGGAAGATATTTCACAAGTGATCAAACAACTCCAAAGTGGTGGTTCAGAAGACTTAATAGATGCCAATTCGGAAAACAAACTAAATGTGTTTGGCACTGATAATATAGAATGTCGTGCAGAGCATCAGGAACTTCTTTCTTATGCTTCTGGAACTGCATCATTGGAGGTTGATTTCCATGAAAATAAAATACTGGTTAATGAAGAGCATCATAAAAGACAGAAAACATCTAGCTTTGATTTAAATTTCCTTGGACCAAAGTGCTACAATTTGAGATCCTCCACTAGATTGAAGGCGTCAATAACCCAACAACACTGTCAACACATAGTACTTGAGAGGGATAGTGATGTAACAGATAGTGATTATGAACCAACCAGTAATGATTAATGCTTGTTTGCTATCTCCATATTAAAGCGCAGATACACATACGTCAGTTCTCGAGAGCCAGCGATGAGCTTCGTGCAAGAAGGTTTTCATGTAAGAAATATACAATAAATAAATTGATTTGCAACTCGGATTGGATTTATTTTGAACTTTTGCCGCGTTTTACGTATGGTTCTTTCATGCCATGCAACCTTGTAATTAGAAAATTAAATGATAATTTTATAAGAAATCAAATTTTGAG

Network for GWHGAAEX012090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.850
SRP064423	SRR2545915	Juvenile tuber	4.630
SRP108465	SRR5643513	five period of Gastrodia elata	2.070
	SRR5643514	five period of Gastrodia elata	2.740
	SRR5643515	five period of Gastrodia elata	2.620
	SRR5643524	five period of Gastrodia elata	2.540
	SRR5643525	five period of Gastrodia elata	1.750
	SRR5643528	five period of Gastrodia elata	3.400
	SRR5643658	five period of Gastrodia elata	1.860
	SRR5643659	five period of Gastrodia elata	2.670
	SRR5643660	five period of Gastrodia elata	1.980
	SRR5643661	five period of Gastrodia elata	1.670
	SRR5643662	five period of Gastrodia elata	2.160
	SRR5643663	five period of Gastrodia elata	2.630
	SRR5643664	five period of Gastrodia elata	2.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.490
SRP279888	Gastro	Gastrodia elata tuber	3.90
	Juven	Juvenile tuber	3.81
	Mother_Gastro	Mother tuber of Gastrodia elata	3.82
	Mother_Juven	Mother tuber of Juvenile	4.99