Gene detail

Detail information of GWHGAAEX012091/evm.TU.scaffold_40.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694902\|ref\|YP_008797956.1\|	4.00E-17	ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0417	3.00E-55	Ubiquitin-protein ligase
nr	gi\|743794585\|ref\|XP_010924210.1\|	1.01E-98	PREDICTED: probable ubiquitin-conjugating enzyme E2 37 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q941B6\|UBC37_ARATH	1.00E-81	Probable ubiquitin-conjugating enzyme E2 37
trEMBL	tr\|M0XGU6\|M0XGU6_HORVD	4.00E-88	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_5992.3}
TAIR	HS7661808	3.00E-55	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000038	2149484	2174810	-

Transcript Sequence
>GWHTAAEX012091 TTCTCATATAAAATTCAAACTGAACATAAAACCATATGAGATTACAAAAGTTATATACACACGATCCTACTGCTTCTACCATTCCCTTCAAAGCAAAACCCTAACTATGAACTCGGCATATTCTCCAATTCCCATCTCCATGATTCGGTGAAAAATATTCGCAGCCTCAACCTCGGCATTGGCTCAGATTACCGCTTCCTCCTCAAAAACCGGTCCAAGACCAAGCGCTTCGGCTGCTGGGCCATTGCAGGATATTTGAACGAAGTTGAACCAGAATGTCGGCTGGTGTTCGTTTGTGATTCTTGAGGTTCAGAGGAAGGAGCGAGGTACCTCGCTGTGGCGTTTGCAAGTACTGGATTAATGGAAGCTGCTCGGTTGAACCTGAGGATGCAAAAGGAGATAAAGCTTCTTATGGTTGATCCTCCTCCAGGGGTTTCATTTCCTTTTCTTTCTGACAAGGACAACTTTTTTTCCTCTTTCTCGAACATTGAAGCCCGATTAACAGGACCCGAAGAAACAGTATATTCTGGAGGGCTTTTTACTCTAAAGATTCAAATTCCGGAGAGATATCCTTTTCAGCCACCTAATGTTGCTTTTGTTACCCCTATCTACCATCCTAACATTGACAATGGAGGAAGAATCTGTCTTGATATTCTCAATTTACCTCCAAAGGGTGGTTGGAAACCATCATTGAACATTTCAACAGTGATGACAAGCATCGGCTTGTTGTTGAGTGATCCCAACCCAGATGACGGATTAATGGCTGAAGCTAGTAGGGAGTACAAATACAATAGAAAAGTTTTTGATGAGAAAGCACGAGATTGGACTCGGAGATTTGCTTATCCTCTTACTGCAACAAAGAATGTTGAAGATGACAGCCAATTGACAAATCTTATGATGGGGGAGGCGAAACCACCCTGGACTCTCTCAATGGATCCTCATCCAGATAAACAAGGAGGTGATGAGGCTGAGGAGAGCAGGAAGAAGAAACTCCGGCTAACTGCCGGCAAGCTCTCTCTCAGTTCAACATCATCCTTCAGAAGTTTCAGCGATGAAAAAAGCATGGAGGATAAAATTGCTGCTGCAGCAGCTGCTAAAGATCACGACAACATCCTGAACGAAAATTTCAAAGCGGTTGAGGAAAGTTCGGACATAAGGACAATAATTGTATCAGATAGTGAAGAAAGTGACAGCGAAATTGCCCGGTCTACGCTGTCCTCACCGAGAACTGCTGCTTTCTGCAAACGGTAAAACATTGCTTCTAACAGCTAAAATATGTCTGCTGATAATACTAGAACGTTTTTGTTGTTAGACGTTTTGAAGCGTTCAGGGTATGCCATAGCATTCTGCTAGAAAGAAGTTGGAACAAAACTTGTGTATTGCTCATCTAACTTCATACCATTTTATTTTTAACAGTAAAATTGATGGAATAATTGTGGTTTGAGTGGCATTTTAGTAGTATTTGAGGTATAGATATTAAATTTGAATGATATTTATGGCAGTGTGCAC

Network for GWHGAAEX012091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.25	UQ_con	9	155	3.30E-39

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K13960	UBE2T, HSPC150	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.630
SRP064423	SRR2545915	Juvenile tuber	2.190
SRP108465	SRR5643513	five period of Gastrodia elata	5.660
	SRR5643514	five period of Gastrodia elata	7.560
	SRR5643515	five period of Gastrodia elata	3.700
	SRR5643524	five period of Gastrodia elata	6.950
	SRR5643525	five period of Gastrodia elata	4.050
	SRR5643528	five period of Gastrodia elata	0.330
	SRR5643658	five period of Gastrodia elata	0.410
	SRR5643659	five period of Gastrodia elata	7.610
	SRR5643660	five period of Gastrodia elata	3.000
	SRR5643661	five period of Gastrodia elata	1.780
	SRR5643662	five period of Gastrodia elata	6.010
	SRR5643663	five period of Gastrodia elata	5.560
	SRR5643664	five period of Gastrodia elata	4.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.690
SRP279888	Gastro	Gastrodia elata tuber	4.12
	Juven	Juvenile tuber	5.19
	Mother_Gastro	Mother tuber of Gastrodia elata	3.59
	Mother_Juven	Mother tuber of Juvenile	2.45