Detail information of GWHGAAEX012092/evm.TU.scaffold_40.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110640159|ref|YP_680369.1| | 6.00E-42 | naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406] |
| nr | gi|681884021|gb|AIM58716.1| | 0 | bibenzyl synthase [Cymbidium hybrid cultivar] |
| Swissprot | tr|P53416|BBS_PHASS | 0 | Bibenzyl synthase |
| trEMBL | tr|A0A088G5Z5|A0A088G5Z5_9ASPA | 0 | Bibenzyl synthase {ECO:0000313|EMBL:AIM58716.1} |
| TAIR | AT5G13930 | 0 | Chalcone and stilbene synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 2253839 | 2255081 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012092
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00195.18 | Chal_sti_synt_N | 9 | 230 | 3.00E-95 |
| PF02797.14 | Chal_sti_synt_C | 243 | 388 | 2.00E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00660 | CHS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Flavonoid biosynthesis | map00941 | ||
| Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0016746 | Molecular Function | transferase activity, transferring acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.450 |
| SRR2545915 | Juvenile tuber | 0.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.590 |
| SRR5643514 | five period of Gastrodia elata | 0.380 | |
| SRR5643515 | five period of Gastrodia elata | 7.090 | |
| SRR5643524 | five period of Gastrodia elata | 1.570 | |
| SRR5643525 | five period of Gastrodia elata | 4.590 | |
| SRR5643528 | five period of Gastrodia elata | 110.560 | |
| SRR5643658 | five period of Gastrodia elata | 9.470 | |
| SRR5643659 | five period of Gastrodia elata | 21.520 | |
| SRR5643660 | five period of Gastrodia elata | 0.590 | |
| SRR5643661 | five period of Gastrodia elata | 5.110 | |
| SRR5643662 | five period of Gastrodia elata | 4.630 | |
| SRR5643663 | five period of Gastrodia elata | 1.850 | |
| SRR5643664 | five period of Gastrodia elata | 8.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.60 |
| Juven | Juvenile tuber | 0.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 96.07 | |
| Mother_Juven | Mother tuber of Juvenile | 26.21 |