Gene detail

Detail information of GWHGAAEX012099/evm.TU.scaffold_40.54

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2340	2.00E-120	Uncharacterized conserved protein
nr	gi\|743809972\|ref\|XP_010928763.1\|	0	PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0U6A7\|M0U6A7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP04450_001}
TAIR	HS7657019	2.00E-120	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000038	2860685	2862895	+

Transcript Sequence
>GWHTAAEX012099 ATGGGAAAGTATATTGATAGAAAGTTAGCAGGATCAAAGAGGTCGAAAATGCCTGACAGTCTCAAGTGTATGAAGCGCCAGAGAAAGAGATTGGATCATCAAAAGAGTCAAAGAGATGAATTGACAGGTACAGTAGATGCAGATATTTTCTCTGAGGAAGATGATGCCTCCATGCAGTTGCCGGTATATGACAACTTGTTAAGGGCATTGGGATCTGGCCGCGATGCACTTGAAGAAGATTATTTCTGTAATAAGAGTGCCAAAAACCAAGGAGACATACGGATTCCCTATACTGTCGGTGCTGTATTTAAATCTGCCAGTACTTTTGCAGAGGAAGACGTTGGAGAAGACAGTGAATCTGATCAAAGTGCACAATTTGGTAATGAAATTATTGAGGAAGGAGGGGGAGGGAAAACCTCAACACATGGGGATGAACTCTATGATCAAGATTATATGCCTGACTCCCAATTTGATGTCAACACACCTTCTGATGAATCAGCAAACAACATCTCTTTCCATCGCCACTTTGGGCATGTTTTGACAAATGAAGAGGTTAATAAGTTAACAAAAGATAGTCTCAAGTTTAAATGGGAGATGCTGGTAAAGGAGATGCCTATGTCCAAGTTGGTGGGAACAGGGCAAGAATTATCGATAGATCTTAATGGTGACCATTTCTATAGGATAAATCCGAGGCTCCATAACCATTGGAAAAACTTGAGCATTAATTTCAATTCTGGTGATTTGCGTTTTTCAAAGATGAGGCTCTTCTTTTCGCTCTGCAATTCTTATCGCAACATAATGCATTGTGATAAGTGGCCATTTTATATGAAAGGCAGAGATGATGATGATGATGATTCAGTCATCATGGATGCATATATTATGCATGCATTAGATCATGTGCATAGGATTCGAGATCTTGTTCTGAAGCATAATGCTAAACTCCGCAAGTATGACAATAGTAAAAACGAAGAGAACGCAATTCATTGCGGTGATATTTACCTGGATCAAGGTTTTACGCGTCCCAAGGTGTTGCTTTTGCTTCCACTTGCAAGCATTGCATATCGAGTGGTGAAGAGGCTTATTCAGCTTTATCCGCTATCACACAAAGGAAATGTAGCTCACATGGATAGGTTTTCTGAAGAGTTTGGAGCAGATGATGCTGAAGAAAGCTTGAAGTCTACAAAGCAGGAAAAACCTGTGGATTTTGAAGTCCTTTTTGGTGGGAACAATAACGATCATTTTATGATTGGCATAAAGTTTACAAAGGGAAGCATTAAATTATACAATAATTTTTATTTGTCCGACATTATTGTAGCGTCTCCTCTTGGTTTAATCACAAAGATTGGGGAGATGGAGATCGATAAGGAGAAGAATGTGGACTATCTTTCTTCAATTGAGGTACTGATCATCGATCATGCTGACATTGTTGCCATGCAGAATTGGTCCCATTTAAGTACTGTGATCGAGCACTTAAATCGAATGCCATCCCAGCAACATGGAACCGATGTCATGCGCATTAAACAATGGTACTTGAATGGGCATGCACGATTTTATCGCCAAACCATACTTTTGGGCTCTTTTCTTACCCCGGATATGAATGCACTATTCAACCGTCTGTGTGTTAACTATGAAGGGAAGGTGAAGATGGTTAGCCAGCACAAAGGCGTTCTTCATCGGGTTTTGCTTCAAGCACGCCAGTTGTTTGAGAGGTTTGAAGCTTCTTCAATAATCAATGCTGATGATGCCCGGCTTGAATATTTCTCTAACAAAGTTTTTCCAAAGATGAAAGATTCGATAGAGGGCAGAACTTTGATATTTATAAGTTCTTACTTTGAGTTCGTCAGAATACGCAATTTCTTAAAATCTCAGAATGCTTCCTTTTGCTTGCTCAGCGAGTACACGAAACAGAGTGATGTGTCCCGCTCACGCCTTTGGTTTTTTGAAGGAAAGAGGAAGATAATGCTTTACACCGAGAGGGCTCATTTCTATCATAGATATAAGATTCGCGGGATAAGGAATTTGATCTTCTACTCACTGCCGGAAAGAAAAGAATTTTATTCCGACATTATCAATATGCTAGAAGGTTCAGAACATATGTCATGCAGTGTGCTTTTCTCGCGTTATGATCTTTACAGGCTGGAGCGGATTGTTGGAACTGCTGCTGCAAATAGGATGAGCTCATCAGAAAAAGCCACTTTTATCTTCTGCTAA

Network for GWHGAAEX012099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06862.11	UTP25	256	735	1.80E-165

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.110
SRP064423	SRR2545915	Juvenile tuber	27.730
SRP108465	SRR5643513	five period of Gastrodia elata	22.320
	SRR5643514	five period of Gastrodia elata	18.720
	SRR5643515	five period of Gastrodia elata	17.010
	SRR5643524	five period of Gastrodia elata	18.170
	SRR5643525	five period of Gastrodia elata	9.020
	SRR5643528	five period of Gastrodia elata	10.260
	SRR5643658	five period of Gastrodia elata	7.620
	SRR5643659	five period of Gastrodia elata	28.610
	SRR5643660	five period of Gastrodia elata	28.350
	SRR5643661	five period of Gastrodia elata	24.640
	SRR5643662	five period of Gastrodia elata	26.210
	SRR5643663	five period of Gastrodia elata	25.400
	SRR5643664	five period of Gastrodia elata	22.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.340
SRP279888	Gastro	Gastrodia elata tuber	22.86
	Juven	Juvenile tuber	25.91
	Mother_Gastro	Mother tuber of Gastrodia elata	18.30
	Mother_Juven	Mother tuber of Juvenile	18.19