Detail information of GWHGAAEX012101/evm.TU.scaffold_40.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530780512|ref|YP_008432319.1|9.00E-50DNA topoisomerase VI subunit A [Thermofilum sp. 1910b]
KOGKOG27955.00E-160Catalytic subunit of the meiotic double strand break transesterase
nrgi|470113664|ref|XP_004293041.1|1.11E-178PREDICTED: meiotic recombination protein SPO11-1-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9M4A2|SPO11_ARATH1.00E-160Meiotic recombination protein SPO11-1
trEMBLtr|I1JJJ1|I1JJJ1_SOYBN1.00E-172Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G46920.1}
TAIRAT3G131705.00E-160Spo11/DNA topoisomerase VI, subunit A protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003829124472982778+
Transcript Sequence

Network for GWHGAAEX012101

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04406.13TP6A_N831421.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10878SPO11 Meiosis - yeast map04113

Gene Ontology

GO term OntologyName
GO:0000737Biological ProcessDNA catabolic process, endonucleolytic
GO:0006259Biological ProcessDNA metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0005524Molecular FunctionATP binding
GO:0003677Molecular FunctionDNA binding
GO:0016889Molecular Functionendodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0005694Cellular Componentchromosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.970
SRR2545915Juvenile tuber7.570
SRP108465SRR5643513five period of Gastrodia elata2.950
SRR5643514five period of Gastrodia elata3.770
SRR5643515five period of Gastrodia elata4.070
SRR5643524five period of Gastrodia elata3.510
SRR5643525five period of Gastrodia elata4.900
SRR5643528five period of Gastrodia elata3.230
SRR5643658five period of Gastrodia elata5.790
SRR5643659five period of Gastrodia elata2.560
SRR5643660five period of Gastrodia elata2.680
SRR5643661five period of Gastrodia elata2.400
SRR5643662five period of Gastrodia elata1.810
SRR5643663five period of Gastrodia elata3.020
SRR5643664five period of Gastrodia elata2.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.300
SRR6049655Rhizomagastrodiae_C368-T10_good_11.100
SRR6049656Rhizomagastrodiae_C368-T07_good_15.950
SRR6049657Rhizomagastrodiae_C368-T07_good_14.750
SRR6049658Rhizomagastrodiae_C368-T04_good_17.410
SRR6049659Rhizomagastrodiae_C368-T04_good_17.390
SRR6049660Rhizomagastrodiae_C368-T01_good_15.370
SRR6049661Rhizomagastrodiae_C368-T04_good_17.440
SRR6049662Rhizomagastrodiae_C368-T01_good_15.320
SRR6049663Rhizomagastrodiae_C368-T01_good_17.670
SRR6049664Rhizomagastrodiae_C368-T10_good_15.270
SRR6049665Rhizomagastrodiae_C368-T10_good_15.270
SRP279888GastroGastrodia elata tuber 3.88
JuvenJuvenile tuber3.84
Mother_GastroMother tuber of Gastrodia elata 5.63
Mother_JuvenMother tuber of Juvenile 2.61