Gene detail

Detail information of GWHGAAEX012105/evm.TU.scaffold_40.61

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1213	5.00E-28	Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1
nr	gi\|672174974\|ref\|XP_008807563.1\|	6.48E-63	PREDICTED: sister chromatid cohesion 1 protein 2 isoform X4 [Phoenix dactylifera]
Swissprot	tr\|Q9FQ20\|SCC12_ARATH	7.00E-29	Sister chromatid cohesion 1 protein 2
trEMBL	tr\|B9RBL8\|B9RBL8_RICCO	4.00E-31	Sister chromatid cohesion 1 protein, putative {ECO:0000313\|EMBL:EEF50939.1}
trEMBL	tr\|B9RBL8\|B9RBL8_RICCO	2.00E-16	Sister chromatid cohesion 1 protein, putative {ECO:0000313\|EMBL:EEF50939.1}
TAIR	AT5G40840	5.00E-28	Rad21/Rec8-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000038	3052582	3068770	-

Transcript Sequence
>GWHTAAEX012105 CTTGCCTCGTCTCTGACTTCCCTCGTACGCCTCTATGGCTTCTCCTGGAAGCACCGAAACCCACATTTCTATCTTAAAGACGACGCCGTTCTCTCTGCTTCGCCATTAGAAGAAGAAGAAGAGGAAGACGTCGAATAGCAGTATTTTAAGAAAAAGAATAGGGATAAGAAGAAGGAAGAATCGGTCATGTTCTATTCGCACTCTCTTCTATCGAGAAACGGGCCTCTGGGCACCATTTGGATTGCCGCGTACTGCTTCAAGAAGCTCAAAAGGGGACAGATTACTTCTACCGACATTTCCTCCACCGTAGATAAGATCATGCCAGAAACTCATATTTCTCATAGAGTGCTGGCTCAACTTCTTCTTGGTATTGTCAAGATATTCTCAAAGAAAGTGGACTTTCTATTTGATGAGTGTAATGAGACATTACATCAAATGAGGAAGTCTCTTTCTCCTGCTCCGGGGATTGCACAGTACAGTGCTAGTACTATAACAAGAAAGGGTATCGGATCTGGTAAAGTTTTAGCTGGTGCTACACCAAGAAAGGGCATCAGATCCCGGAGAGTTTTAACGTTTGCAGTTGATCAAGATAACACAATGAAGGAGCATACCACTGAGCAAGAGATAGAAACAATGCTTGCATCATATCATGACGTTACTGTCACTCTTCCAGAACAATTTGAACTTGATTTATTTGAATTGGGAGTCTTGGATGAAGTAGATTTTGGTAAAAGTCATCAGCGTTGCAGACCTCAAGATGAATGTAACAGTGGTAGGAGCTGTAAGCCTTCATTTTCGATAGAGTGTCTTACCGATGAGATTGTCGATGTAGGAGAATATACGTCTGGGTGTTTTACTCCTCTTGCTGATGTCCTTCCTTCCTGCTTGATGGACATTGATCTTGAGCTTAGTGAAGCTCATATCTCAAGCAACATTGTTGGCACTTCGAAATCAATGGAGGAATTTCATCAAGGAGGAGATTTTGAGAAGCAATTTTTCGATGTTGTGATTCAAGAGAGCTTTATGACTGTGCAAAAGGTTGAAGAGCAAAAAAGTCTAACTGAGACAATCGATTTACTAAAGGAAAAATCATCAGGTATGATGGACGTTGATTTTGTGCTCAATGAAACTCACAACTCAAGCAATTTTGCTTGCATTGAGAAACCTCCTGAGTTTAAACATACAGATTTTGGGAAGCATGCAGGACCTGTATCTTTGCATGGTGTGATCCAAGAGAGCCATATATCATTAAATCAACAAACTGTGCCATCATGTGGAGATAAGATCCTACCTGCTGAAGAGCAAATTAATCAAGTAGAGAAAAACCATTTACAAGGGGCAAAAGCATTCACTATGATTGATGCTGAACTTGAGCATAGTAAAACTCATAAAAGCAAATTTTCTAGCACTAAAAAATCTGTTGAGGAACTTCAACCTGCGAAAGGTTTTGAGAAACAAGGGTGCTTATCCGGAAGTGTTCCTTTACATGATGTGATTGAAAAGAGAGATGCACTATTATATCCTGTGCATAGTGTGGCATTTGCTGGAGATAAGATCCGGCTTTTTGATGACCAAGGAAATTTAACAAAGCGACATGATTTACATGGGGAAAGAGAATCCAGCGTAATGGATGTTGATCTTGAGCATAGTGGAATTCATAACTCTAACAACTTTGCTGGTACTGAGAAATCTATGGAAGAATTTCACTATGGAGGATATTTTGAGAAGCAAGTATGCTTATCAGGAAGTATATCTTTACCTGATGTGATCCAAGATAGCCATGTACCAGTAAATAGCACACTGACCGTGCAATTTGGAAGTGATGAGATCCTACCTGCTGATGAGCAAAGAAATCTGACTGTGACAGCCAATTTTCAGGTGGAAAAAACTTCTGAAAGTGTGAAAGATAACTCTATCTGTGAAAAGCTTGCTGACGCCTTGCCTTCTGGGACAGCCTTCCCTCTATTTATGCTTGGCACTCCAGCGATCACGGAAAGTTCCAGAGTACTGAGGAAAAGAAAGAAAGATTTTGATGATAGCCTTGTTATATCAAATCAGGCTATGAAGCAAAGCATACATGATGCAAGTGGCCTTGTGTGCAAACGAAGAAAATTGCCTCTTACTAAGCTTGATATATGGAAGTTTTGGAGCTGCTCTAAATTTTGTCAGAGACATATGGATCCGTTAAATCCTTTTTCCTCTCTGGAGTCAACAAACATGCCACAGAAGAAAAGATTTTTCCGGCAGTCGAAGAAGTCTGAAGATAAACTTATTGATTCAGCTAGTGTCAAAGATGGATTGCCTCGAAAATCTTCATATTCAAAAATTGAAATGGAAGCTCCGATCCAAAAAGCCTACATAATGCCCAAAAGTTTAAAGAAAAAACTGGGCGGAATGTTGAGTCTTCCACCAAATGAATCTGTAGTTTGTGGTAGCAATCCAAACAACATAGATGACATAATTCCTCCTACAATTACCGAAACAAAAACAAAAACAGAAGTTTTGATACAAGAATCAGACACAAGCTGTAAAACTTCTTCAAACTCTTTGAGCAGTAAAATTGTTTCTTTGGAAAATTTCAGCAAGGAATCCACTTTTCCAGATACTTCAGATTCTCAATTAAAAAAGGAACTATGTTTTCATGGTAGTGATTTTAAAGAAAAAGACATTCGTTTTAACATAGATAGTGGATGGTCTCCTAGTGCAAGGGCAGCAGCAAAGCATATTTGGAGCAGGTTTGCGAGATTTGGAGAGCAAAAACAAGACTTCGCTTTGAGTCTGGCACAGATTGTTGAAGGGAAAACAAGAGACACATGTTCAAGGTTCTTTTATGAGATACTGGCTTTGAAGACATATGGATGCATAGACGTGAGGCAGGATATTCCTTATGGCGATGTCTCTGTGTCTGTCTCAGCAACTCCAGCACTAGAATCTTACTTATAGAGCATCAGTTCTTCTACGGGGGCTGCAGAAGTCCTTTTTTGTAAATGTCCTTTGTACATTTTTTATAGTTAAATATTTACAGAAAGCTAATTTTGCTGTATTATGTATATATATATATTAATGACTGAATATATCACTCTTTTTTAACACATGATCCTCAATAGCTGTCTTTGAGACTTACAACTTGAGTTTTGCTTTAATTTTATAGTCTTATCAAGTAAGAGGTCATTTTCCAATGCAT

Network for GWHGAAEX012105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04825.12	Rad21_Rec8_N	1	91	5.30E-26
PF04824.15	Rad21_Rec8	863	910	5.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06670	SCC1, MCD1, RAD21	Cell cycle	map04110
K06670	SCC1, MCD1, RAD21	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.140
SRP064423	SRR2545915	Juvenile tuber	2.040
SRP108465	SRR5643513	five period of Gastrodia elata	1.160
	SRR5643514	five period of Gastrodia elata	1.020
	SRR5643515	five period of Gastrodia elata	0.900
	SRR5643524	five period of Gastrodia elata	1.260
	SRR5643525	five period of Gastrodia elata	16.260
	SRR5643528	five period of Gastrodia elata	11.080
	SRR5643658	five period of Gastrodia elata	38.020
	SRR5643659	five period of Gastrodia elata	0.450
	SRR5643660	five period of Gastrodia elata	0.150
	SRR5643661	five period of Gastrodia elata	0.190
	SRR5643662	five period of Gastrodia elata	0.800
	SRR5643663	five period of Gastrodia elata	0.710
	SRR5643664	five period of Gastrodia elata	0.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.720
SRP279888	Gastro	Gastrodia elata tuber	0.65
	Juven	Juvenile tuber	0.36
	Mother_Gastro	Mother tuber of Gastrodia elata	0.58
	Mother_Juven	Mother tuber of Juvenile	0.51