Detail information of GWHGAAEX012108/evm.TU.scaffold_40.65_evm.TU.scaffold_40.64
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-24 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672121009|ref|XP_008783794.1| | 0 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Phoenix dactylifera] |
| Swissprot | tr|Q8LFN2|Y3037_ARATH | 3.00E-177 | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor) |
| trEMBL | tr|K3ZHF7|K3ZHF7_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si026009m} |
| TAIR | AT5G14210 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 3176242 | 3236174 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012108
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 139 | 199 | 1.50E-06 |
| PF13855.5 | LRR_8 | 256 | 315 | 4.00E-07 |
| PF07714.16 | Pkinase_Tyr | 485 | 751 | 5.50E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.280 |
| SRR2545915 | Juvenile tuber | 22.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.720 |
| SRR5643514 | five period of Gastrodia elata | 17.550 | |
| SRR5643515 | five period of Gastrodia elata | 15.850 | |
| SRR5643524 | five period of Gastrodia elata | 18.670 | |
| SRR5643525 | five period of Gastrodia elata | 26.460 | |
| SRR5643528 | five period of Gastrodia elata | 18.660 | |
| SRR5643658 | five period of Gastrodia elata | 21.880 | |
| SRR5643659 | five period of Gastrodia elata | 18.490 | |
| SRR5643660 | five period of Gastrodia elata | 17.300 | |
| SRR5643661 | five period of Gastrodia elata | 16.200 | |
| SRR5643662 | five period of Gastrodia elata | 13.240 | |
| SRR5643663 | five period of Gastrodia elata | 12.730 | |
| SRR5643664 | five period of Gastrodia elata | 13.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.79 |
| Juven | Juvenile tuber | 16.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.95 | |
| Mother_Juven | Mother tuber of Juvenile | 9.28 |