Detail information of GWHGAAEX012109/evm.TU.scaffold_40.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34492.00E-2760S acidic ribosomal protein P2
nrgi|658039311|ref|XP_008355226.1|1.90E-33PREDICTED: 60S acidic ribosomal protein P2-2-like [Malus domestica]
Swissprottr|O24415|RLA2B_MAIZE4.00E-2960S acidic ribosomal protein P2B
trEMBLtr|A0A072VLF0|A0A072VLF0_MEDTR3.00E-3460S acidic ribosomal protein {ECO:0000313|EMBL:KEH38965.1}
TAIRAT3G445902.00E-2760S acidic ribosomal protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003832386323246108-
Transcript Sequence

Network for GWHGAAEX012109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00428.18Ribosomal_60s171152.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02943RP-LP2, RPLP2 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006414Biological Processtranslational elongation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms161.200
SRR2545915Juvenile tuber209.340
SRP108465SRR5643513five period of Gastrodia elata447.800
SRR5643514five period of Gastrodia elata564.770
SRR5643515five period of Gastrodia elata446.920
SRR5643524five period of Gastrodia elata460.940
SRR5643525five period of Gastrodia elata246.590
SRR5643528five period of Gastrodia elata302.400
SRR5643658five period of Gastrodia elata206.570
SRR5643659five period of Gastrodia elata345.260
SRR5643660five period of Gastrodia elata323.010
SRR5643661five period of Gastrodia elata361.390
SRR5643662five period of Gastrodia elata285.410
SRR5643663five period of Gastrodia elata297.210
SRR5643664five period of Gastrodia elata265.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1326.610
SRR6049655Rhizomagastrodiae_C368-T10_good_1534.350
SRR6049656Rhizomagastrodiae_C368-T07_good_1390.100
SRR6049657Rhizomagastrodiae_C368-T07_good_1301.250
SRR6049658Rhizomagastrodiae_C368-T04_good_1291.180
SRR6049659Rhizomagastrodiae_C368-T04_good_1254.840
SRR6049660Rhizomagastrodiae_C368-T01_good_1305.580
SRR6049661Rhizomagastrodiae_C368-T04_good_1330.030
SRR6049662Rhizomagastrodiae_C368-T01_good_1448.260
SRR6049663Rhizomagastrodiae_C368-T01_good_1409.530
SRR6049664Rhizomagastrodiae_C368-T10_good_1592.040
SRR6049665Rhizomagastrodiae_C368-T10_good_1592.040
SRP279888GastroGastrodia elata tuber 396.57
JuvenJuvenile tuber302.31
Mother_GastroMother tuber of Gastrodia elata 219.80
Mother_JuvenMother tuber of Juvenile 176.87