Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|11499469\|ref\|NP_070710.1\|	4.00E-19	DNA-directed RNA polymerase subunit H [Archaeoglobus fulgidus DSM 4304]
KOG	KOG3218	1.00E-80	RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)
nr	gi\|357164319\|ref\|XP_003580017.1\|	5.54E-85	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Brachypodium distachyon]
Swissprot	tr\|O81098\|RPB5A_ARATH	3.00E-81	DNA-directed RNA polymerases II and IV subunit 5A
trEMBL	tr\|I1IZ23\|I1IZ23_BRADI	2.00E-85	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI5G13967.1}
TAIR	AT3G22320	1.00E-80	Eukaryotic rpb5 RNA polymerase subunit family protein

Scaffold	Start	End	Strand
GWHAAEX00000038	3338100	3344203	+

Transcript Sequence
>GWHTAAEX012114 GTCTCTCGCACGCAAGCCGAATTCCTTTTCCCGATTCTCCTCCGCTCGCCGAGCCCTTCCACTCGCCGAGCGCCTCCACTCGCCGAGCCCCTCCACTCGCCGAGCCTCTCCATCTAGCCGATCCATCCTCTCGCCGAGTCTCCATCTAGCTGAGCCGCCTCCTCTTTTCCTCAGACGATCGTGCTCTGCCACGAGCAGAGGAAAGGACATACGTCCGTCTATCCTCGTCTCTAAGGCAGCCCGGACTTAGGGAAGTCCATTTCTTTTCTCCTCTCTAGTCCACTGAGGTTTGGAGAAGGTTGGCCGGCGATCCTCTGAAGCTCCCTTGCTGCGATCCTCATAAGGTGGTCGACGGAATCGCAGGTGGTAAAGCATTAAAGGATATTTTCTGGCTCTGCCTTTGGTTAGTGGACATTATGTCATCGGATGAGGAAACAGCTAAGCTTTTCCGCATATGGAAGACGACGTTAGAGATGCTTAGGGACCGAGGTTTCCTTGTTCTTGATTCTGAGATCCAAATAACTATGCACGAGTTCCTTGATAAGTTTGGTGAGAATTTCAAGCGAGAGAACCTTGATATGTTCAAAACCAAGAAGGATGATCCAAACGATCATTTATTCGTTTTCTTCCCAAGTGAGACAAAGTTAAATGTGAAGATAGCAAAAAGATACGCAGAACGAATGAGAACAGAGAATGTTTTGAGGGGAATAATTGTTGCCAAAGAGGCTCCAACGGCTATTGCAAAACGTGCGCTTGAAGATCTATCTATGAAATACTATCTTGAGGTTTTTATGGATGAAGAGTTGCTGATCAATGTTAACAACCATATGCTTGTACCAAAGCATGAGGTGCTTAGCAATGACGAGAAGAAAGAATTGCTAAAGCGCTATACTGTCAAAGAAACTCAGCTCCCTAGAATGCAGTCCAGTGATCCAATCGCTAGATATTTGGGCATCCGGAGAGGGCAGGTTGTGAAGATCACCCGTGACAGCGAGACCGCCGGGAAATACATCACTTATCGATTTGTTGTTTGATGGTTAATATAATATTATATTATTTGATGAGTTTTTGATTCACATTGTAATTGAAGGTTTAGACGACTTGTTGTTTGTAAAGGCTTTTCACAGAGCATGGCTAAGGTCATGTCTTCCTGAGGTCTATTGAAAGGGTTTAGGGTATAGTTTTAGGGTTTAGTGCTGTCAGTGGTAAGTTTTTTGTATTTATAAGAAAGAAGTTTGATATGTAATCAAAATATTTTGAAGTTTGTGATAAAAATGTGAATTCTGAATGAAGCTATAAGACAAATAAAGGAAAGAAATGTCATCTCATAATGTG

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03871.13	RNA_pol_Rpb5_N	5	89	5.00E-27
PF01191.18	RNA_pol_Rpb5_C	132	204	8.70E-35

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K03013	RPB5, POLR2E	RNA polymerase	map03020
K03013	RPB5, POLR2E	Cytosolic DNA-sensing pathway	map04623

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0005634	Cellular Component	nucleus

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.040
SRP064423	SRR2545915	Juvenile tuber	25.490
SRP108465	SRR5643513	five period of Gastrodia elata	32.410
	SRR5643514	five period of Gastrodia elata	29.600
	SRR5643515	five period of Gastrodia elata	30.740
	SRR5643524	five period of Gastrodia elata	30.650
	SRR5643525	five period of Gastrodia elata	39.910
	SRR5643528	five period of Gastrodia elata	46.640
	SRR5643658	five period of Gastrodia elata	45.940
	SRR5643659	five period of Gastrodia elata	38.210
	SRR5643660	five period of Gastrodia elata	36.590
	SRR5643661	five period of Gastrodia elata	36.400
	SRR5643662	five period of Gastrodia elata	47.310
	SRR5643663	five period of Gastrodia elata	35.390
	SRR5643664	five period of Gastrodia elata	39.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.200
SRP279888	Gastro	Gastrodia elata tuber	34.42
	Juven	Juvenile tuber	28.77
	Mother_Gastro	Mother tuber of Gastrodia elata	43.59
	Mother_Juven	Mother tuber of Juvenile	29.98