Detail information of GWHGAAEX012115/evm.TU.scaffold_40.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41979.00E-73FOG: PPR repeat
nrgi|695030754|ref|XP_009402857.1|6.59E-117PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|Q8LE47|PPR87_ARATH3.00E-73Pentatricopeptide repeat-containing protein At1g61870, mitochondrial (Precursor)
trEMBLtr|M0T2Y9|M0T2Y9_MUSAM1.00E-96Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P00410_001}
TAIRAT1G618709.00E-73pentatricopeptide repeat 336

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003833764503377319+
Transcript Sequence

Network for GWHGAAEX012115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13812.5PPR_32032616.50E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.510
SRR2545915Juvenile tuber13.900
SRP108465SRR5643513five period of Gastrodia elata17.190
SRR5643514five period of Gastrodia elata14.850
SRR5643515five period of Gastrodia elata14.900
SRR5643524five period of Gastrodia elata11.490
SRR5643525five period of Gastrodia elata17.740
SRR5643528five period of Gastrodia elata24.190
SRR5643658five period of Gastrodia elata19.960
SRR5643659five period of Gastrodia elata22.010
SRR5643660five period of Gastrodia elata25.320
SRR5643661five period of Gastrodia elata20.730
SRR5643662five period of Gastrodia elata26.210
SRR5643663five period of Gastrodia elata20.610
SRR5643664five period of Gastrodia elata19.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.150
SRR6049655Rhizomagastrodiae_C368-T10_good_124.990
SRR6049656Rhizomagastrodiae_C368-T07_good_119.130
SRR6049657Rhizomagastrodiae_C368-T07_good_115.930
SRR6049658Rhizomagastrodiae_C368-T04_good_115.670
SRR6049659Rhizomagastrodiae_C368-T04_good_111.120
SRR6049660Rhizomagastrodiae_C368-T01_good_116.410
SRR6049661Rhizomagastrodiae_C368-T04_good_119.050
SRR6049662Rhizomagastrodiae_C368-T01_good_118.260
SRR6049663Rhizomagastrodiae_C368-T01_good_117.830
SRR6049664Rhizomagastrodiae_C368-T10_good_119.020
SRR6049665Rhizomagastrodiae_C368-T10_good_119.020
SRP279888GastroGastrodia elata tuber 14.64
JuvenJuvenile tuber11.18
Mother_GastroMother tuber of Gastrodia elata 14.21
Mother_JuvenMother tuber of Juvenile 12.59