Detail information of GWHGAAEX012116/evm.TU.scaffold_40.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41975.00E-25FOG: PPR repeat
nrgi|743793413|ref|XP_010923923.1|3.22E-31PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Elaeis guineensis]
Swissprottr|Q8LE47|PPR87_ARATH1.00E-25Pentatricopeptide repeat-containing protein At1g61870, mitochondrial (Precursor)
trEMBLtr|I1HSF1|I1HSF1_BRADI4.00E-29Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G52250.1}
TAIRAT1G618705.00E-25pentatricopeptide repeat 336

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003833773863379580+
Transcript Sequence

Network for GWHGAAEX012116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.960
SRR2545915Juvenile tuber18.170
SRP108465SRR5643513five period of Gastrodia elata10.610
SRR5643514five period of Gastrodia elata6.420
SRR5643515five period of Gastrodia elata7.830
SRR5643524five period of Gastrodia elata4.830
SRR5643525five period of Gastrodia elata10.320
SRR5643528five period of Gastrodia elata15.830
SRR5643658five period of Gastrodia elata11.120
SRR5643659five period of Gastrodia elata6.990
SRR5643660five period of Gastrodia elata7.020
SRR5643661five period of Gastrodia elata10.480
SRR5643662five period of Gastrodia elata11.610
SRR5643663five period of Gastrodia elata8.670
SRR5643664five period of Gastrodia elata6.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.020
SRR6049655Rhizomagastrodiae_C368-T10_good_12.990
SRR6049656Rhizomagastrodiae_C368-T07_good_115.840
SRR6049657Rhizomagastrodiae_C368-T07_good_18.530
SRR6049658Rhizomagastrodiae_C368-T04_good_111.260
SRR6049659Rhizomagastrodiae_C368-T04_good_111.020
SRR6049660Rhizomagastrodiae_C368-T01_good_114.000
SRR6049661Rhizomagastrodiae_C368-T04_good_18.720
SRR6049662Rhizomagastrodiae_C368-T01_good_115.130
SRR6049663Rhizomagastrodiae_C368-T01_good_119.150
SRR6049664Rhizomagastrodiae_C368-T10_good_117.210
SRR6049665Rhizomagastrodiae_C368-T10_good_117.210
SRP279888GastroGastrodia elata tuber 4.48
JuvenJuvenile tuber2.22
Mother_GastroMother tuber of Gastrodia elata 7.99
Mother_JuvenMother tuber of Juvenile 5.29